Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58711 | Soybean | nucleus | 42.32 | 88.3 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 76.46 | 77.7 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 27.8 | 76.25 |
| GSMUA_Achr11P... | Banana | nucleus | 80.61 | 72.4 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 75.12 | 67.77 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 68.29 | 67.63 |
| GSMUA_Achr11P... | Banana | nucleus | 68.29 | 67.55 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 70.24 | 67.37 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 72.32 | 65.31 |
| KRH11131 | Soybean | nucleus | 70.37 | 64.25 |
| CDY02285 | Canola | nucleus | 67.93 | 63.8 |
| KRH21113 | Soybean | nucleus | 69.39 | 63.5 |
| CDY12048 | Canola | nucleus | 65.49 | 63.4 |
| Bra010776.1-P | Field mustard | nucleus | 64.27 | 63.34 |
| CDX90245 | Canola | nucleus | 65.61 | 63.15 |
| CDY09598 | Canola | nucleus | 66.95 | 63.1 |
| KRH42603 | Soybean | nucleus | 68.05 | 61.66 |
| AT1G30330.3 | Thale cress | nucleus | 69.39 | 60.86 |
| Os12t0613700-01 | Rice | nucleus | 64.88 | 59.18 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.71 | 58.9 |
| TraesCS5B01G039800.1 | Wheat | nucleus | 63.05 | 58.02 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 62.93 | 57.91 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 63.41 | 57.84 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 56.34 | 57.68 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 63.17 | 57.56 |
| EES17392 | Sorghum | nucleus | 62.68 | 57.43 |
| Zm00001d041497_P005 | Maize | nucleus | 61.71 | 56.98 |
| GSMUA_Achr11P... | Banana | nucleus | 55.85 | 56.54 |
| Zm00001d031064_P003 | Maize | nucleus | 61.22 | 55.96 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 40.12 | 49.55 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 34.76 | 45.97 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 45.12 | 43.33 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 39.76 | 41.69 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 44.76 | 40.33 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 23.78 | 40.04 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 46.59 | 39.26 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 23.05 | 39.05 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 40.0 | 38.23 |
| GSMUA_Achr10P... | Banana | nucleus | 30.49 | 37.09 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 29.27 | 36.64 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 38.41 | 36.17 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 46.59 | 35.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.56 | 35.59 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 30.0 | 35.34 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 29.76 | 35.01 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 28.29 | 34.73 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 43.78 | 34.55 |
| GSMUA_Achr10P... | Banana | nucleus | 27.56 | 33.88 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 26.71 | 32.88 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 38.29 | 32.34 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 32.32 | 32.16 |
| GSMUA_Achr10P... | Banana | nucleus | 32.2 | 32.04 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 32.44 | 30.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.07 | 29.75 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 36.71 | 28.67 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr3G23290_001 |
| EnsemblPlants:GSMUA_Achr3P23290_001 | EnsemblPlants:GSMUA_Achr3T23290_001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0SH45 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0002950173 |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23290_001]
Coordinates
chr3:+:24151504..24158747
Molecular Weight (calculated)
91178.4 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.437
Length
820 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSSGLGN QQQEDTEEQR CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEIDSLPSYR SLPPQLVCQL HNVTMHADVE SDEVYAQMTL
101: QPLNPEEQKE PYLPTELGTA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA MDLHGNEWKF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLIAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR
301: MLFETEESSV RRYMGTITGI GDLDPVHWPN SHWRSVKVGW DESTAGERQP KVSLWEIEPL TTFPMYPSPF PFRLKRPWPP GLPSLHGGKH DDFSLSSPVT
401: WFRNGGNPGL QSLNFQGTGV TPWTQPRFDT TILGLPPDMY LTMAADGIQE TRTMDPTKQV SSAMLQFQQI QNTASMYSPM PPSQLLHHGQ SQLPQAFLQN
501: IQLNQVQSQS QSEFFQHQLQ QQKFLSDHQQ VPSEASSRSF SDSNTNCVST SDASPLHNIL SQFSPGEASH LLSVSEPNIS QRSVMLPPFP GRECAVNQDG
601: NMDARNQLLF GVNIDSSSLL MQNGMTSLCN VGRESDSTGM HYDASNFVGS SVHDFALSQA LTGSGGLEET GFLQSSQNAD QLNQKGGTFV KVSKSGSFGR
701: SLDITRFSSY NELRSELGRM FGLEGQLEDP LRSGWQLVFV DRENDILLVG DDPWQEFVNN VWCIKILSPQ EVQQMGKHDV NFLNSGSIKM LPTNGCDDYI
801: SRQDSRNLST RVASMGSLEH
101: QPLNPEEQKE PYLPTELGTA SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA MDLHGNEWKF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLIAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR
301: MLFETEESSV RRYMGTITGI GDLDPVHWPN SHWRSVKVGW DESTAGERQP KVSLWEIEPL TTFPMYPSPF PFRLKRPWPP GLPSLHGGKH DDFSLSSPVT
401: WFRNGGNPGL QSLNFQGTGV TPWTQPRFDT TILGLPPDMY LTMAADGIQE TRTMDPTKQV SSAMLQFQQI QNTASMYSPM PPSQLLHHGQ SQLPQAFLQN
501: IQLNQVQSQS QSEFFQHQLQ QQKFLSDHQQ VPSEASSRSF SDSNTNCVST SDASPLHNIL SQFSPGEASH LLSVSEPNIS QRSVMLPPFP GRECAVNQDG
601: NMDARNQLLF GVNIDSSSLL MQNGMTSLCN VGRESDSTGM HYDASNFVGS SVHDFALSQA LTGSGGLEET GFLQSSQNAD QLNQKGGTFV KVSKSGSFGR
701: SLDITRFSSY NELRSELGRM FGLEGQLEDP LRSGWQLVFV DRENDILLVG DDPWQEFVNN VWCIKILSPQ EVQQMGKHDV NFLNSGSIKM LPTNGCDDYI
801: SRQDSRNLST RVASMGSLEH
001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.