Factsheet for Zm00001d041497_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17392	Sorghum	nucleus	93.69	92.96
Zm00001d031064_P003	Maize	nucleus	91.44	90.52
KRH58711	Soybean	nucleus	37.84	85.5
HORVU5Hr1G009650.20	Barley	nucleus	77.25	76.99
TraesCS5B01G039800.1	Wheat	nucleus	77.14	76.88
Os12t0613700-01	Rice	nucleus	77.7	76.75
TraesCS5A01G038300.2	Wheat	nucleus	77.59	76.64
TraesCS5D01G045700.2	Wheat	nucleus	77.03	76.0
CDY02285	Canola	nucleus	61.26	62.31
Zm00001d052637_P001	Maize	mitochondrion	5.74	62.2
Bra010776.1-P	Field mustard	nucleus	58.11	62.02
VIT_10s0003g04100.t01	Wine grape	nucleus	63.4	62.0
CDY12048	Canola	nucleus	59.12	61.98
CDX90245	Canola	nucleus	59.46	61.97
GSMUA_Achr5P26580_001	Banana	nucleus	56.19	61.83
GSMUA_Achr3P23290_001	Banana	nucleus	56.98	61.71
CDY09598	Canola	nucleus	59.91	61.15
KRH21113	Soybean	nucleus	61.04	60.49
KRH11131	Soybean	nucleus	60.36	59.69
AT1G30330.3	Thale cress	nucleus	62.61	59.47
Zm00001d014377_P002	Maize	nucleus	61.26	59.32
KRH42603	Soybean	nucleus	60.02	58.9
GSMUA_Achr11P...	Banana	nucleus	60.36	58.71
Zm00001d053819_P002	Maize	nucleus	59.68	57.67
Zm00001d001879_P036	Maize	nucleus	53.04	57.65
Zm00001d036593_P001	Maize	plastid	60.25	55.73
Zm00001d026590_P003	Maize	nucleus	50.45	52.83
Zm00001d050781_P001	Maize	nucleus	26.69	37.62
Zm00001d045026_P002	Maize	nucleus	44.26	37.32
Zm00001d016838_P001	Maize	nucleus	27.59	34.85
Zm00001d003601_P006	Maize	nucleus	26.13	34.02
Zm00001d001945_P002	Maize	nucleus	36.04	33.76
Zm00001d026540_P002	Maize	nucleus	36.37	33.68
Zm00001d031522_P007	Maize	nucleus	40.09	32.78
Zm00001d023659_P007	Maize	nucleus	29.5	31.72
Zm00001d011953_P002	Maize	nucleus	28.15	31.02
Zm00001d014690_P014	Maize	nucleus	41.44	30.82
Zm00001d042267_P003	Maize	nucleus	28.38	30.81
Zm00001d041056_P019	Maize	nucleus	28.83	30.33
Zm00001d015243_P001	Maize	nucleus	37.05	30.13
Zm00001d039267_P005	Maize	nucleus	22.07	28.32
Zm00001d049295_P001	Maize	nucleus	27.7	28.08

Protein Annotations

EntrezGene:100279854	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:B8A0C3	EMBL:BT055015	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM33131.1
ProteinID:ONM33135.1	ProteinID:ONM33138.1	ProteinID:ONM33140.1	ProteinID:ONM33144.1	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF67
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000191747B	EnsemblPlantsGene:Zm00001d041497	EnsemblPlants:Zm00001d041497_P005
EnsemblPlants:Zm00001d041497_T005	SEG:seg	:	:	:	:

Description

ARF-transcription factor 9Auxin response factor 6

Coordinates

chr3:-:124224737..124230978

Molecular Weight (calculated)

97850.0 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.393

Length

888 amino acids

Sequence
(BLAST)

001: MNLSPPRMSE PSLESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETGEVYAQMT
101: LQPLSPEEQK EPFLPIELGA GSNQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQHPPVQELV ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITC ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP LMAFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL
401: MWLRDGNRGA QSLNFQGLGA SPWLQPRIDY PLLGLKLDTY QQMAAAALEE IRAGDHLKQI SSLLPVQQPQ NLSGGLDPLY GNPVLQQMQF QSQQSSLQVV
501: QQGYGPNASD SGFLQNQLQL QKQQEPLPQQ QQQALQQQSH QEMQHHLSAS CHDIANVASG VSESGSASQT ESSLLSGSSY QQIYDGNSGP GLHLHNGFHN
601: CSSQESSNLL NLSRSGQFMA SEGWPLKRLA VESLSGHELQ PVQHKFEKVN HQSNVSHISS TLPPLSARDS YSAQASGTND QSHLLSSSFA IHDGLTAVRS
701: GGVGSGTDAI TIASLRYNDM NLLPENPIAT SSCLGESGTF NSLDDVCGVN PSQGGTFVKV YKSGSPGRSL DITRFSSYYE LRSELERLFG LEGQLEDPVR
801: SGWQLVFVDR ENDILLVGDD PWQEFVNSVW CIKILSPQDV QQMVRGGGDL LSTTGVRTLQ GSVCDDYSAG HDMQNLTGSI APVVPLDY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.