Factsheet for Zm00001d036593_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90218	Sorghum	nucleus	89.69	93.69
Zm00001d014377_P002	Maize	nucleus	88.65	92.8
Zm00001d052637_P001	Maize	mitochondrion	7.6	89.02
KRH58711	Soybean	nucleus	35.94	87.79
Os06t0677800-01	Rice	nucleus	83.44	87.35
TraesCS7A01G461700.1	Wheat	nucleus	80.21	84.71
TraesCS7B01G363100.1	Wheat	nucleus	80.1	84.6
TraesCS7D01G449900.2	Wheat	nucleus	79.9	84.47
HORVU7Hr1G106280.1	Barley	nucleus	80.21	82.09
Zm00001d053819_P002	Maize	nucleus	71.88	75.08
GSMUA_Achr5P00590_001	Banana	nucleus	65.0	68.65
GSMUA_Achr11P...	Banana	nucleus	58.85	68.15
VIT_10s0003g04100.t01	Wine grape	nucleus	64.27	67.95
GSMUA_Achr6P19850_001	Banana	nucleus	58.85	66.08
KRH11131	Soybean	nucleus	61.15	65.37
KRH21113	Soybean	nucleus	60.62	64.96
CDY02285	Canola	nucleus	58.65	64.49
Bra010776.1-P	Field mustard	nucleus	55.83	64.42
CDY12048	Canola	nucleus	56.77	64.34
CDX90245	Canola	nucleus	57.08	64.32
KRH42603	Soybean	nucleus	59.9	63.54
CDY09598	Canola	nucleus	57.5	63.45
AT1G30330.3	Thale cress	nucleus	60.1	61.71
Zm00001d031064_P003	Maize	nucleus	56.46	60.42
Zm00001d041497_P005	Maize	nucleus	55.73	60.25
Zm00001d001879_P036	Maize	nucleus	51.04	59.98
Zm00001d026590_P003	Maize	nucleus	48.44	54.83
Zm00001d045026_P002	Maize	nucleus	43.65	39.79
Zm00001d050781_P001	Maize	nucleus	25.31	38.57
Zm00001d003601_P006	Maize	nucleus	25.42	35.78
Zm00001d016838_P001	Maize	nucleus	26.15	35.7
Zm00001d001945_P002	Maize	nucleus	34.58	35.02
Zm00001d031522_P007	Maize	nucleus	39.48	34.9
Zm00001d026540_P002	Maize	nucleus	34.79	34.83
Zm00001d014690_P014	Maize	nucleus	41.67	33.5
Zm00001d015243_P001	Maize	nucleus	36.98	32.51
Zm00001d023659_P007	Maize	nucleus	27.29	31.72
Zm00001d011953_P002	Maize	nucleus	26.25	31.27
Zm00001d042267_P003	Maize	nucleus	26.56	31.17
Zm00001d041056_P019	Maize	nucleus	26.88	30.57
Zm00001d049295_P001	Maize	nucleus	26.04	28.54
Zm00001d039267_P005	Maize	nucleus	20.52	28.47

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6LPM9	ProteinID:AQK81456.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF22
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000844C6D6	EnsemblPlantsGene:Zm00001d036593	EnsemblPlants:Zm00001d036593_P001
EnsemblPlants:Zm00001d036593_T001	SEG:seg	:	:	:	:

Description

ARF-transcription factor 22Auxin response factor 6

Coordinates

chr6:+:93920665..93928357

Molecular Weight (calculated)

105784.0 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.440

Length

960 amino acids

Sequence
(BLAST)

001: MRLSSSSSSS ASVLPAQPGS PEGPALRVCR YATAQGPQVH SPMISRSIRN LQIAVLSYQN KTNTSAVTDV EEHKCLNSEL WHACAGPLVS LPAVGSRVVY
101: FPQGHSEQVA ASTNKEMESQ IPSYPNLPPQ LICQLHNVTM QADAETEEVY AQMTLQPLNP QELKDPYLPA ELGLVSKQPT NYFCKTLTAS DTSTHGGFSV
201: PRRAAEKVFP PLDFTQQPPC QELMATDLHG NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNDNNQLLLG IRRANRPQTV MPSSVLSSDS
301: MHIGLLAAAA HAASTNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRISV GMRFRMLFET EESSVRRYMG TITGISDLDS VRWPNSHWRS VKVGWDESTA
401: GDRQPRVSLW EIEPLTTFPT YTSPFPLRLK RPWPTGLPSL HGGKDDDLAN SLMWLRDTTN PGFQSLNFGG LGMNSWMQPR LDTSLLGLQP DMYQAMATGA
501: FQDPTKQASP TMLQFQQPQN IAGRAAPLSS QILQQAHPQF QQQPYIQNIS ESTIQAQGQS EFLKQQIQRS QSFNEQKPQL QPQQESQQQQ QSQCLQAPQH
601: QQIQQNIANY QSVSNALSAF SQLSSASQST PMALQTILPF SQAQSFTDTS ASSLSPSNTN TMQNTLRPFS SEAVSHLSMP RPTAIPVPDA WSSKRAAVES
701: LLPSRPQDSS QMQQLDSTPA SIPHSSALAP LPGRGCLVDQ DANPDPQNHL LFGVSIDSQS LLMEGGIHGL QNGNDSTAIP YSTSNFLSPS QNDFPLDHTL
801: NSSGCLDDSG YVPPCSDNSD QVNRPPATFV KVYKSGTYGR SLDITRFSSY HELRRELGRL FGLEGQLEDP LRSGWQLVFV DREEDVLLVG DDPWQEFVST
901: VSCIKILSPQ EVQQMGKQGL ELLSSAPAAR RLGSSCDGYV SRQESRSLST GIASVGSVEF

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.