Factsheet for TraesCS7D01G449900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G461700.1	Wheat	nucleus	98.9	98.79
TraesCS7B01G363100.1	Wheat	nucleus	98.57	98.46
HORVU7Hr1G106280.1	Barley	nucleus	97.8	94.67
KRH58711	Soybean	nucleus	38.11	88.04
Os06t0677800-01	Rice	nucleus	88.44	87.57
EER90218	Sorghum	nucleus	87.0	85.96
Zm00001d014377_P002	Maize	nucleus	86.12	85.28
Zm00001d036593_P001	Maize	plastid	84.47	79.9
TraesCS6D01G127600.2	Wheat	nucleus	80.18	78.53
VIT_10s0003g04100.t01	Wine grape	nucleus	69.49	69.49
GSMUA_Achr5P00590_001	Banana	nucleus	69.05	68.98
GSMUA_Achr11P...	Banana	nucleus	62.11	68.03
KRH21113	Soybean	nucleus	65.53	66.41
KRH11131	Soybean	nucleus	65.64	66.37
GSMUA_Achr6P19850_001	Banana	nucleus	62.44	66.32
CDY12048	Canola	nucleus	61.67	66.12
Bra010776.1-P	Field mustard	nucleus	60.57	66.11
CDX90245	Canola	nucleus	61.89	65.96
CDY02285	Canola	nucleus	63.22	65.75
CDY09598	Canola	nucleus	61.89	64.6
KRH42603	Soybean	nucleus	64.1	64.31
AT1G30330.3	Thale cress	nucleus	64.65	62.78
TraesCS5D01G045700.2	Wheat	nucleus	60.46	61.0
TraesCS2D01G548900.1	Wheat	nucleus	53.96	58.82
TraesCS7D01G161900.1	Wheat	nucleus	48.02	40.94
TraesCS2D01G307600.1	Wheat	nucleus	27.09	37.61
TraesCS6D01G102300.1	Wheat	nucleus	44.6	35.87
TraesCS7D01G250100.4	Wheat	nucleus	42.51	35.35
TraesCS7D01G409700.1	Wheat	nucleus	44.93	34.72
TraesCS2D01G491200.2	Wheat	nucleus	36.45	34.66
TraesCS3D01G434700.1	Wheat	nucleus	28.74	32.79
TraesCS3D01G166700.1	Wheat	nucleus	24.34	29.16
TraesCS3D01G442000.7	Wheat	nucleus	28.19	28.89

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF22
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:TraesCS7D01G449900	EnsemblPlants:TraesCS7D01G449900.2	TIGR:cd10017
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:568949472..568954531

Molecular Weight (calculated)

100174.0 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.474

Length

908 amino acids

Sequence
(BLAST)

001: MRLSSPAGAV LPAQAPPSPE AAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE
101: VYAQMTLQPL NPQELKDPYL PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTMQP PAQELFAKDL HGNEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITGISDL DAVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL
401: TSSLMWLRDS ANPGFQSLNF GGAGMNPWMQ PRLDASLLGL QPDIYQTMAA AAFQDPTKMS PTMLQFQQPQ NMVGRATPLL QSQILQQMQP QFQQQSYLQN
501: MNGTTIQGQA HSEFLQQQLQ RCQSFNEQKP QLLQQQESNQ QQSQGMQVPQ HQHMQQQKNM ANYQPAYSQL SPGPQSSPAA LQTASPFSQP QSFSDTNMSS
601: LSPSGAPTMH NTLGPFSSET ASHLSMSRPT AVPVPDSWSS KRVAVESLIP SRPQSTPHME QLSSTPPSIP QSSALAPLPG RGCLVDQDGS SDPQNHLLFG
701: VNIDSHSLLM QGGLHDENDS TAIPYSTSNF LSPSQHDFSL DQTLNSSGCL DESGYVPCSH TPDQVNQPPA TFVKVYKSGT YGRSLDITKF SNYHELRRDL
801: GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK QGLELLSSAP GKRLGGGGGS SCDDYASRQE SRSLSTGIAS
901: VGSVEVEF

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.