CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02285	Canola	nucleus	96.55	96.22
KRH58711	Soybean	nucleus	40.92	90.59
CDX90245	Canola	nucleus	87.01	88.85
AT1G30330.3	Thale cress	nucleus	95.06	88.45
CDY12048	Canola	nucleus	86.09	88.43
VIT_10s0003g04100.t01	Wine grape	nucleus	74.71	71.59
KRH21113	Soybean	nucleus	73.1	70.98
KRH11131	Soybean	nucleus	72.53	70.27
GSMUA_Achr5P02450_001	Banana	nucleus	64.71	68.0
KRH42603	Soybean	nucleus	70.57	67.85
GSMUA_Achr3P23290_001	Banana	nucleus	63.1	66.95
GSMUA_Achr5P26580_001	Banana	nucleus	61.26	66.05
GSMUA_Achr5P00590_001	Banana	nucleus	66.67	63.81
GSMUA_Achr11P...	Banana	nucleus	60.34	63.33
GSMUA_Achr11P...	Banana	nucleus	65.75	62.65
GSMUA_Achr6P19850_001	Banana	nucleus	61.38	62.46
TraesCS7B01G363100.1	Wheat	nucleus	64.83	62.05
TraesCS7A01G461700.1	Wheat	nucleus	64.83	62.05
TraesCS7D01G449900.2	Wheat	nucleus	64.6	61.89
Os02t0164900-01	Rice	nucleus	64.48	61.78
Os06t0677800-01	Rice	nucleus	64.83	61.5
EER90218	Sorghum	nucleus	64.94	61.48
Zm00001d014377_P002	Maize	nucleus	64.48	61.18
EES04575	Sorghum	nucleus	63.91	61.03
EES17392	Sorghum	nucleus	62.07	60.34
HORVU7Hr1G106280.1	Barley	nucleus	64.83	60.13
Zm00001d041497_P005	Maize	nucleus	61.15	59.91
Zm00001d031064_P003	Maize	nucleus	61.49	59.64
Zm00001d053819_P002	Maize	nucleus	62.99	59.63
TraesCS6B01G167100.1	Wheat	nucleus	63.45	59.55
TraesCS6D01G127600.2	Wheat	nucleus	63.33	59.44
TraesCS6A01G138600.4	Wheat	nucleus	63.22	59.27
Os12t0613700-01	Rice	nucleus	61.15	59.18
HORVU6Hr1G026730.9	Barley	nucleus	63.1	59.1
TraesCS5B01G039800.1	Wheat	nucleus	59.66	58.25
HORVU5Hr1G009650.20	Barley	nucleus	59.66	58.25
TraesCS5A01G038300.2	Wheat	nucleus	59.77	57.84
CDY07460	Canola	nucleus	51.84	57.75
CDY53537	Canola	nucleus	54.02	57.74
TraesCS5D01G045700.2	Wheat	nucleus	59.66	57.67
CDY39274	Canola	nucleus	51.61	57.64
Zm00001d036593_P001	Maize	plastid	63.45	57.5
CDX74594	Canola	nucleus	54.02	57.39
CDX80025	Canola	nucleus	26.78	39.9
CDX95705	Canola	nucleus	24.48	39.08
CDX83741	Canola	nucleus	37.82	38.89
CDY62586	Canola	nucleus	37.82	38.89
CDY61164	Canola	nucleus	38.28	38.68
CDY01393	Canola	nucleus	38.39	38.61
CDY27291	Canola	nucleus	27.24	38.29
CDY29392	Canola	nucleus	38.51	38.24
CDY39348	Canola	nucleus	38.28	37.88
CDX96672	Canola	nucleus	44.02	37.55
CDY26690	Canola	nucleus	45.17	37.46
CDX83778	Canola	nucleus	43.91	37.45
CDY41030	Canola	nucleus	45.4	37.33
CDY47607	Canola	nucleus	25.86	37.25
CDY10978	Canola	nucleus	26.67	37.12
CDY50434	Canola	nucleus	26.32	36.64
CDX92437	Canola	nucleus	43.68	36.54
CDY65065	Canola	nucleus	27.59	36.31
CDY33603	Canola	nucleus	27.47	36.16
CDY03502	Canola	nucleus	24.71	35.83
CDY69758	Canola	nucleus	17.01	35.58
CDY16560	Canola	nucleus	42.41	35.41
CDY67714	Canola	nucleus	21.49	35.22
CDY48583	Canola	nucleus	21.95	34.92
CDY21993	Canola	nucleus	21.84	34.86
CDY45069	Canola	nucleus	43.56	34.05
CDY41720	Canola	nucleus	20.69	32.73
CDX86939	Canola	nucleus	31.84	32.59
CDY53570	Canola	nucleus	18.74	32.53
CDX87230	Canola	nucleus	30.92	32.49
CDY00245	Canola	nucleus	31.72	32.43
CDY31545	Canola	nucleus	28.05	32.23
CDY67247	Canola	nucleus	31.38	32.08
CDX80168	Canola	nucleus	27.82	31.88
CDX94748	Canola	endoplasmic reticulum, vacuole	13.45	31.62
CDX94777	Canola	nucleus	20.23	31.6
CDY49005	Canola	nucleus	20.0	31.24
CDY36940	Canola	nucleus	19.77	31.05
CDY16798	Canola	nucleus	31.15	30.9
CDY24168	Canola	nucleus	19.54	30.2
CDY55738	Canola	nucleus	18.51	29.81
CDY54111	Canola	nucleus	19.43	29.81
CDX94484	Canola	nucleus	19.2	26.68
CDX94528	Canola	nucleus	17.7	23.02
CDY24162	Canola	nucleus	14.71	19.69

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078FC73	UniProt:A0A078FC73
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY09598	ProteinID:CDY09598	ProteinID:CDY09598.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00031225001	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF68	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EDC9E7	SEG:seg	:	:	:

Description

BnaC05g23210DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FC73]

Coordinates

chrLK031997:+:827447..831470

Molecular Weight (calculated)

96010.6 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.507

Length

870 amino acids

Sequence
(BLAST)

001: MRLSTAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHEDD MSMGMGMSSP
401: LMWDRGLQSL NFQGMGVNPW MQPRLDASGL LGMQNDFQNP SGFSMQPPSL MQPQMLQQQL SQQQQQLSQQ QQQQSYLPVP ETHQPQSQSN NLLSQQQQVV
501: DNHNQSASSA AAVSAMSQFG SASQSMTSLC QQQSFLDTNG GNNNPMSPLH TLLSNFSQDE SSQLLNLTRT TNSAAMTSSG WPSKRPAVDL SSFGNNSNTQ
601: SVIEQLGQSH NTSNVPPNAV SLPPFPGGGR ECSIEQEGGS PSDPHSHLLF GVNIDSSSLL MPNGMSNLRS IGIEGGDSTT LPFTTSNFNN DFSGGNLAMT
701: TPSSCIDEPG FLQSSENLGS ENQQSNNTFV KVYKSGSFGR SLDITKFSSY HELRSELARM FGLEGQLEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVSS
801: VWCIKILSPQ EVQQMGKRGL ELLNSAPPSS NNNVVEKLPS NNGNCDDFGS RSDPRNRGNG IASVGGSFNY

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.