Factsheet for GSMUA_Achr5P02450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58711	Soybean	nucleus	43.12	90.84
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.14	77.93
GSMUA_Achr5P26580_001	Banana	nucleus	69.2	71.0
VIT_10s0003g04100.t01	Wine grape	nucleus	75.12	68.5
GSMUA_Achr3P23290_001	Banana	nucleus	67.63	68.29
KRH11131	Soybean	nucleus	71.62	66.04
GSMUA_Achr6P19850_001	Banana	nucleus	68.12	65.96
KRH21113	Soybean	nucleus	71.38	65.96
CDY02285	Canola	nucleus	69.44	65.86
GSMUA_Achr11P...	Banana	nucleus	65.94	65.86
Bra010776.1-P	Field mustard	nucleus	65.82	65.5
CDY12048	Canola	nucleus	66.91	65.41
CDX90245	Canola	nucleus	67.15	65.26
GSMUA_Achr5P00590_001	Banana	nucleus	71.62	65.24
CDY09598	Canola	nucleus	68.0	64.71
GSMUA_Achr11P...	Banana	nucleus	71.26	64.62
KRH42603	Soybean	nucleus	69.69	63.76
AT1G30330.3	Thale cress	nucleus	70.53	62.46
GSMUA_AchrUn_...	Banana	mitochondrion	36.96	59.88
GSMUA_Achr11P...	Banana	nucleus	57.0	58.27
GSMUA_Achr4P25960_001	Banana	nucleus	56.16	58.05
GSMUA_Achr1P08230_001	Banana	mitochondrion	38.16	47.59
GSMUA_Achr3P10240_001	Banana	nucleus	34.42	45.97
GSMUA_Achr9P18170_001	Banana	nucleus	43.72	42.39
GSMUA_Achr1P20040_001	Banana	nucleus	39.98	42.33
GSMUA_Achr9P08310_001	Banana	vacuole	23.79	40.45
GSMUA_Achr9P14090_001	Banana	nucleus	44.32	40.33
GSMUA_Achr8P13620_001	Banana	nucleus	23.55	40.29
GSMUA_Achr3P05460_001	Banana	nucleus	46.38	39.47
GSMUA_Achr6P36980_001	Banana	nucleus	39.73	38.34
GSMUA_Achr10P...	Banana	nucleus	29.71	36.5
GSMUA_Achr8P23850_001	Banana	nucleus	46.5	36.08
GSMUA_AchrUn_...	Banana	nucleus	27.66	36.06
GSMUA_Achr6P01740_001	Banana	nucleus	45.05	35.9
GSMUA_Achr2P19760_001	Banana	nucleus	28.74	35.63
GSMUA_Achr5P05010_001	Banana	nucleus	37.2	35.36
GSMUA_Achr6P07390_001	Banana	nucleus	27.78	35.11
GSMUA_Achr6P12780_001	Banana	nucleus	29.11	34.63
GSMUA_Achr7P24330_001	Banana	nucleus	27.29	33.93
GSMUA_Achr10P...	Banana	nucleus	27.29	33.88
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	28.02	33.29
GSMUA_Achr1P20000_001	Banana	nucleus	38.41	32.75
GSMUA_Achr6P08090_001	Banana	nucleus	32.37	32.52
GSMUA_Achr10P...	Banana	nucleus	32.13	32.28
GSMUA_Achr6P16450_001	Banana	nucleus	32.13	30.47
GSMUA_AchrUn_...	Banana	nucleus	31.76	29.75
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	36.84	29.05

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G02450_001
EnsemblPlants:GSMUA_Achr5P02450_001	EnsemblPlants:GSMUA_Achr5T02450_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SV24
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF68	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000294A055
SEG:seg	:	:	:	:	:

Description

Auxin response factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02450_001]

Coordinates

chr5:-:1551366..1559600

Molecular Weight (calculated)

92363.2 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.451

Length

828 amino acids

Sequence
(BLAST)

001: MRLSSSGLPQ QTQEGEQKCL NSELWHACAG PLVCLPAIGS RVVYFPQGHS EQVAASTNKE VDGHIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ
101: PLSLEEQKEP YLPAELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNESNQ LLIGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSAFP LRLKRPWPSG LPSLHGGKDD DIGLNSSLMW
401: LQDGERGIQS LNFQGFGMTP WMHQRCNSSI LGLQPDMYQA MASAALQEMR AVDFSKQATS TVMQFQQHQN ITNASAPLLA SQQLQSRPLQ QQEQEQLHPR
501: SLQQQEQKPQ KQQIQQQQLS NQQIPNAMST LSQFASTSQA QTLSLQKMAS LCQQQNLPET IINRMSTSAV ESIPVLQSMQ PEVKQLGSQI NFSQNAVTVP
601: PSSGRDCSLN QECGMDRQSN LLSSVNIDSS SLLVQNGMSN LRNFDNDTVS TLMPFVSTTG TDYALHQALT SSNCIEDSEF LQSPNSVGVM NPQNGTFVKV
701: YKSGSFGRSL DITKFNSYPE LRSELGRLFG LEGLLEDPLR SGWQLVFVDR ENDVLLVGDD PWHEFVNNVS SIKILSPQEV QQMGKEGVDL LNAATNRRIP
801: SHTSDEYISR QESRNLSNGM ASVGSLDY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.