Factsheet for GSMUA_Achr5P05010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14090_001	Banana	nucleus	66.36	63.52
GSMUA_Achr3P05460_001	Banana	nucleus	70.84	63.41
GSMUA_Achr8P23850_001	Banana	nucleus	72.9	59.51
Os06t0702600-01	Rice	nucleus	61.77	54.29
GSMUA_Achr6P01740_001	Banana	nucleus	62.23	52.17
OQU84350	Sorghum	nucleus	62.8	51.12
Os02t0141100-00	Rice	nucleus	64.29	50.18
EER90336	Sorghum	nucleus	66.7	50.13
TraesCS7B01G316600.1	Wheat	nucleus	66.25	49.15
TraesCS6D01G102300.1	Wheat	nucleus	63.61	49.07
TraesCS6A01G113000.1	Wheat	nucleus	63.83	48.99
TraesCS7A01G416400.1	Wheat	nucleus	65.9	48.93
TraesCS6B01G141300.2	Wheat	nucleus	63.49	48.89
TraesCS7D01G409700.1	Wheat	nucleus	65.9	48.85
VIT_11s0065g00310.t01	Wine grape	nucleus	62.46	48.79
HORVU6Hr1G020330.30	Barley	nucleus	63.38	48.38
Zm00001d014690_P014	Maize	nucleus	66.25	48.33
Solyc07g016180.2.1	Tomato	nucleus	59.47	46.58
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	64.06	46.42
PGSC0003DMT400025312	Potato	nucleus	59.13	46.23
Zm00001d015243_P001	Maize	nucleus	57.06	45.51
KRH74145	Soybean	nucleus	57.18	45.11
KRH49070	Soybean	nucleus	57.18	44.86
Solyc05g047460.2.1	Tomato	nucleus	55.45	44.03
PGSC0003DMT400035592	Potato	nucleus	55.22	43.85
GSMUA_Achr3P10240_001	Banana	nucleus	30.54	42.9
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	14.7	42.81
GSMUA_Achr9P18170_001	Banana	nucleus	41.45	42.27
KRH60117	Soybean	nucleus	52.35	41.49
KRH41404	Soybean	nucleus	52.12	40.79
GSMUA_Achr3P23290_001	Banana	nucleus	36.17	38.41
GSMUA_Achr5P26580_001	Banana	nucleus	35.02	37.79
GSMUA_Achr5P02450_001	Banana	nucleus	35.36	37.2
GSMUA_Achr4P25960_001	Banana	nucleus	34.1	37.08
GSMUA_Achr11P...	Banana	nucleus	34.9	36.67
GSMUA_AchrUn_...	Banana	mitochondrion	21.35	36.4
GSMUA_Achr11P...	Banana	nucleus	33.64	36.17
GSMUA_Achr6P19850_001	Banana	nucleus	35.13	35.79
GSMUA_Achr5P00590_001	Banana	nucleus	37.2	35.64
GSMUA_Achr11P...	Banana	nucleus	36.85	35.16
GSMUA_Achr1P20040_001	Banana	nucleus	31.46	35.04
GSMUA_Achr6P36980_001	Banana	nucleus	32.84	33.33
GSMUA_Achr1P08230_001	Banana	mitochondrion	23.65	31.02
GSMUA_Achr8P13620_001	Banana	nucleus	17.11	30.79
GSMUA_Achr10P...	Banana	nucleus	23.31	30.12
GSMUA_Achr6P07390_001	Banana	nucleus	22.5	29.92
GSMUA_Achr6P12780_001	Banana	nucleus	23.88	29.89
GSMUA_Achr9P08310_001	Banana	vacuole	16.65	29.77
GSMUA_Achr2P19760_001	Banana	nucleus	22.39	29.19
GSMUA_Achr10P...	Banana	nucleus	22.16	28.94
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	22.96	28.69
GSMUA_AchrUn_...	Banana	nucleus	20.32	27.87
GSMUA_Achr1P20000_001	Banana	nucleus	31.0	27.81
GSMUA_Achr7P24330_001	Banana	nucleus	20.55	26.88
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	31.11	25.81
GSMUA_Achr6P08090_001	Banana	nucleus	23.88	25.24
GSMUA_Achr10P...	Banana	nucleus	23.31	24.64
GSMUA_Achr6P16450_001	Banana	nucleus	24.11	24.05
GSMUA_AchrUn_...	Banana	nucleus	24.11	23.76

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G05010_001
EnsemblPlants:GSMUA_Achr5P05010_001	EnsemblPlants:GSMUA_Achr5T05010_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SVT0
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF9	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000295FE49
SEG:seg	:	:	:	:	:

Description

Auxin response factor 5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G05010_001]

Coordinates

chr5:+:3671276..3678040

Molecular Weight (calculated)

98040.7 Da

IEP (calculated)

5.980

GRAVY (calculated)

-0.521

Length

871 amino acids

Sequence
(BLAST)

001: MMRTIVPISH TFLTIAYEKE ALLASELALK QTRSPTEFFC KTLTASDTST HGGFSVPRRA AEKIFPALDF SMQPPAQEIQ ARDLHENLWT FRHIYRGQPK
101: RHLLTTGWSL FVSGKKLFAG DSVLFIRDEK QQLLLGIRRA NRQPTSISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRACPSEFVI PFAKYQKAVY
201: SNQIFLGMRF RMLFETEESG TRRYMGTITG ISDLDPVRWK NSQWHNLQVG WDESAAGERH NRVSIWEIEP VIAPFFICPP FFRKRTRQPG MLDDESSEME
301: NIFKRAMPWL GEETCIKDSE TQSTVMPGLS LVQWMNMQQN PSLASQTLQT EYLCSLAGPV RNLGTTDLSR PLGLQASKQN NIIQPQVLIQ IQLQQQQHQP
401: QQEPPTMIQN KELLQTSLHQ NQQQHPQQLL LQQQKQQQQH QDQQLEQQYQ PQPSRILAVN QQLSDQQQSS FSQPRMQQPP FPQIQESQKT LPDVLQQLLN
501: SHSLVQQPMI PQPSEGTQSG FTNDNPFCST SPSANNGAIL PHSILNGIQN YTLESTEKTS QSPLTPFSKV QNQGVIAPQT CVGNTTQMDY LDTTSSATSV
601: CLSQTDGPLH KIFPLSSFNQ PSMLRVAPTY GDVQGTDPGD NVPFGDNIDS SLELPLTIDT MLANSIDSGK YQNRITRDVV ANYNASKDAQ QDLSLSMVSQ
701: AFGIPDMAFN SIDSTTNENV FLTKSSWTPV PPPLQHMRTY TKVYKRGAVG RSIDITRYSG YDELKYDLAR MFSIEGQLED RQRIGWKLVY VDHENDVLLV
801: GDDPWEEFVN CVRCIKILSP QEVQQMSIDV DLENNSLLNQ ACSSSDGGNA WRGHHDQNSG NLSAGSYDHF E

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.