Factsheet for VIT_11s0065g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025312	Potato	nucleus	77.13	77.2
Solyc07g016180.2.1	Tomato	nucleus	76.86	77.07
KRH49070	Soybean	nucleus	74.53	74.86
KRH74145	Soybean	nucleus	72.65	73.37
PGSC0003DMT400035592	Potato	nucleus	71.66	72.83
Solyc05g047460.2.1	Tomato	nucleus	71.39	72.56
KRH60117	Soybean	nucleus	67.89	68.88
KRH41404	Soybean	nucleus	67.8	67.92
GSMUA_Achr3P05460_001	Banana	nucleus	58.74	67.32
GSMUA_Achr9P14090_001	Banana	nucleus	54.26	66.48
Os06t0702600-01	Rice	nucleus	56.5	63.57
Os08t0520550-01	Rice	nucleus	35.7	62.48
GSMUA_Achr5P05010_001	Banana	nucleus	48.79	62.46
Os08t0520500-01	Rice	cytosol	2.78	62.0
GSMUA_Achr8P23850_001	Banana	nucleus	57.49	60.08
GSMUA_Achr6P01740_001	Banana	nucleus	55.78	59.87
EER90336	Sorghum	nucleus	61.26	58.93
Os02t0141100-00	Rice	nucleus	57.67	57.62
OQU84350	Sorghum	nucleus	54.89	57.2
HORVU7Hr1G051930.4	Barley	nucleus	55.52	57.16
TraesCS7A01G252000.2	Wheat	nucleus	55.61	57.04
TraesCS7D01G409700.1	Wheat	nucleus	60.09	57.02
TraesCS7D01G250100.4	Wheat	nucleus	55.78	56.96
TraesCS7A01G416400.1	Wheat	nucleus	59.91	56.95
TraesCS7B01G316600.1	Wheat	nucleus	59.82	56.81
EES15359	Sorghum	nucleus	55.78	56.8
TraesCS7B01G138900.6	Wheat	nucleus	55.7	56.76
Zm00001d031522_P007	Maize	nucleus	55.16	56.63
TraesCS6D01G102300.1	Wheat	nucleus	57.31	56.6
Zm00001d014690_P014	Maize	nucleus	60.45	56.45
TraesCS6B01G141300.2	Wheat	nucleus	57.13	56.32
TraesCS6A01G113000.1	Wheat	nucleus	57.22	56.21
HORVU6Hr1G020330.30	Barley	nucleus	57.49	56.18
Zm00001d015243_P001	Maize	nucleus	54.08	55.22
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	59.37	55.07
VIT_11s0016g00640.t01	Wine grape	nucleus	51.75	49.96
VIT_10s0003g04100.t01	Wine grape	nucleus	37.85	46.48
VIT_12s0028g01170.t01	Wine grape	nucleus	38.3	46.06
VIT_18s0001g13930.t01	Wine grape	nucleus	36.77	43.02
VIT_04s0079g00200.t01	Wine grape	nucleus	27.26	43.0
VIT_18s0089g00910.t01	Wine grape	nucleus	23.14	39.75
VIT_12s0035g01800.t01	Wine grape	nucleus	23.32	38.35
VIT_02s0025g01740.t01	Wine grape	nucleus	23.05	37.68
VIT_15s0046g00290.t01	Wine grape	nucleus	23.05	36.61
VIT_07s0104g01230.t01	Wine grape	nucleus	21.88	35.06
VIT_01s0244g00150.t01	Wine grape	nucleus	22.78	33.03
VIT_06s0004g03130.t01	Wine grape	nucleus	23.59	32.96
VIT_17s0000g00320.t01	Wine grape	nucleus	24.75	32.02

Protein Annotations

EntrezGene:100263801	wikigene:100263801	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB48915	ProteinID:CCB48915.1	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6H9P6	EMBL:FN595502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100263801	wikigene:LOC100263801	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF9	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002108430	ArrayExpress:VIT_11s0065g00310
EnsemblPlantsGene:VIT_11s0065g00310	EnsemblPlants:VIT_11s0065g00310.t01	unigene:Vvi.4620	RefSeq:XP_002266603	RefSeq:XP_002266603.2	RefSeq:XP_010656700.1
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6H9P6]

Coordinates

chr11:+:13985443..13992706

Molecular Weight (calculated)

123267.0 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.551

Length

1115 amino acids

Sequence
(BLAST)

0001: MKAPTNGAAA AATAAPNPCE GEKKSINPEL WQACAGPLVN LPPAGTLVVY FPQGHSEQVA ASMKKDVDAQ IPNYPNLPSR LLCILHNVTL HADPETDEVY
0101: AQMTLQPVPA YDKESLLRSD LALKTNKPQT DFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELVAKDLHD NVWTFRHIYR GQPKRHLLTT
0201: GWSLFVSGKR LFAGDAVLFI RDEKQQLLLG IRRANRQPTN LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAAYSNQISL
0301: GMRFRMMFET EESGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA GERRNRVSIW EIEPVTAPFF ICPPPFFRSK RPRQPGMPDD ESSDLENLFK
0401: RTMPWLGDDI CMKDPQAVHG LSLVQWMNMQ QNPPLGNSAQ PNYMHSLSGS VMQNLAGADL SRQLGLSAPQ IPQQSNLQFN NAQRPPQQVP QLDQLTKLPA
0501: TLNPLGSVIQ PQQQLNDIAQ QPRQNLMNQT LPSSQVQAQL LQQPQALVQN HNILQQQPSV QNQQLHRNLP QNLQQQQQPQ QQQQQIMGQN QQQNLMPSQP
0601: PDQANQQLQM SDNQIQLQLL QKLQQQQQSL LAQQSTMQQT AQLTQLQDPQ RQLLDVSQNF SRSVASGQIL EMPQATSTSL PQSLVIPQQI TKSNSQTNVR
0701: FSHPPQQPKL QQQQPGMLPE LPGHVVLPPM TATNQLSTAG SSLLTGAAGA GQSGITDDVP SCSTSPSTNN CPNVIQPILN GRAHRTTAME EMAQSSATLL
0801: SGSGLETISA NANLVKDFQQ KPDIKPSLNI SKSHNQGFFA PQTYVNVAAV QTDYLDTSSS ATSVCLSQND HLQQNNNPLS FNQPSMMFRD TSQDREAQAD
0901: PRNNVQFGTN IDSQLGIPML PDPILSKGMV GSGKEFSNNL SSGGLLANYE NPKDAQQDLS SSIVSQSFGV PDMAFNSIDS AINDSSFLNR GPWAPAPQFQ
1001: RMRTYTKVYK RGAVGRSIDI TRYSGYDELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDIGNS
1101: VLQNQACSSS DGGNA

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.