Factsheet for VIT_18s0089g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01800.t01	Wine grape	nucleus	76.73	73.45
GSMUA_Achr10P...	Banana	nucleus	68.1	65.58
GSMUA_Achr9P08310_001	Banana	vacuole	48.69	64.89
GSMUA_Achr6P07390_001	Banana	nucleus	63.33	62.75
GSMUA_Achr6P12780_001	Banana	nucleus	66.87	62.36
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	66.41	61.84
Os02t0557200-01	Rice	nucleus	64.56	61.8
Zm00001d050781_P001	Maize	nucleus	59.78	61.59
Os04t0442000-01	Rice	nucleus	63.64	61.37
TraesCS2B01G326400.1	Wheat	nucleus	61.79	61.31
EES06968	Sorghum	nucleus	63.33	61.16
TraesCS2A01G309300.1	Wheat	nucleus	61.48	61.01
TraesCS2D01G307600.1	Wheat	nucleus	61.48	61.01
EES10850	Sorghum	nucleus	61.48	60.36
HORVU2Hr1G076920.3	Barley	nucleus	61.48	59.73
Zm00001d016838_P001	Maize	nucleus	63.79	58.89
Zm00001d003601_P006	Maize	nucleus	60.25	57.33
VIT_02s0025g01740.t01	Wine grape	nucleus	53.93	51.32
VIT_15s0046g00290.t01	Wine grape	nucleus	53.47	49.43
VIT_01s0244g00150.t01	Wine grape	nucleus	50.54	42.65
VIT_17s0000g00320.t01	Wine grape	nucleus	55.47	41.76
VIT_07s0104g01230.t01	Wine grape	nucleus	40.99	38.22
VIT_06s0004g03130.t01	Wine grape	nucleus	39.6	32.21
VIT_10s0003g04100.t01	Wine grape	nucleus	38.67	27.64
VIT_12s0028g01170.t01	Wine grape	nucleus	38.67	27.08
VIT_18s0001g13930.t01	Wine grape	nucleus	36.67	24.97
VIT_04s0079g00200.t01	Wine grape	nucleus	25.27	23.2
VIT_11s0065g00310.t01	Wine grape	nucleus	39.75	23.14
VIT_11s0016g00640.t01	Wine grape	nucleus	38.06	21.39

Protein Annotations

EntrezGene:100263592	wikigene:100263592	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
EMBL:AM445188	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CAN74121	ProteinID:CAN74121.1
ProteinID:CCB44120	ProteinID:CCB44120.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GVY5	EMBL:FN594956	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100263592
wikigene:LOC100263592	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF28	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
TIGR:TC62498	UniParc:UPI00021091E3	ArrayExpress:VIT_18s0089g00910	EnsemblPlantsGene:VIT_18s0089g00910	EnsemblPlants:VIT_18s0089g00910.t01	RefSeq:XP_002266947
RefSeq:XP_002266947.1	RefSeq:XP_003634630	RefSeq:XP_003634630.1	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6GVY5]

Coordinates

chr18:-:28749580..28756704

Molecular Weight (calculated)

72374.7 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.481

Length

649 amino acids

Sequence
(BLAST)

001: MAALNYQLNG SKLGTVNDAL YKELWHACAG PLVNVPREQE RVYYFPQGHM EQLEASMHQG LDQKMPSFNL PSKILCKVVN VHLRAEPETD EVYAQVTLLP
101: EPDQSEITSP DPPLPEPQSC TVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSQNP PWQELVAKDL HGNEWHFRHI FRGQPRRHLL TTGWSVFVSS
201: KRLAAGDAFI FLRQVTFCIG ENGELRVGVR RLMRQLNNVP PSVISSHSMH LGVLATASHA ITTGTLFSVF YKPRASPSEF IVSVNKYLEA RNHKVSVGMR
301: FKMRFEGDEA PERRFSGTIV GVGDTGSSGW TDSEWRSLKV QWDEPSSILR PERVSPWELE PLVTETPLTA QPMQRSKRPR SPVLSSPTPG LSAFAVKTNS
401: HSFTVNYSST AVSNNSAYWP QQSEPVPELF TPVPNKEYGK KKPENGNGYR LFGIQLVDNS NVEETLPVTT ISSGAGEDQP VVCLDADSDH QSQRSNINQS
501: KTPTVGSDPE KSCLGSSLLQ SRQIRSCTKV HMQGMAVGRA VDLTQFSSYK ELLSKLEEMF DIKGELCGPT KKWQVVYTDD EDDMMMVGDD PWHEFCSMVR
601: KIFIYTVEEV KELSPKAKLP LKGEFKPGKP DSKTTIGTED HSSMVGSGF

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.