Factsheet for VIT_17s0000g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_10s0003g01480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT5G62000.1	VIT_10s0003g01480.t01	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0523800-01	Rice	nucleus	31.79	74.86
KRH41062	Soybean	nucleus	72.74	73.68
KRH59742	Soybean	nucleus	72.97	73.31
Solyc12g042070.1.1	Tomato	nucleus	69.95	72.83
PGSC0003DMT400037454	Potato	nucleus	69.72	72.5
KRH54110	Soybean	nucleus	70.88	72.48
PGSC0003DMT400036765	Potato	nucleus	71.0	72.43
KRH63855	Soybean	nucleus	70.77	72.36
Solyc03g118290.2.1	Tomato	nucleus	70.65	71.99
CDX86939	Canola	nucleus	67.29	68.24
AT5G62000.1	Thale cress	nucleus	67.98	68.22
Bra010048.1-P	Field mustard	nucleus	66.94	67.8
CDY00245	Canola	nucleus	66.94	67.8
CDX87230	Canola	nucleus	64.97	67.63
VIT_01s0244g00150.t01	Wine grape	nucleus	59.74	66.97
CDY67247	Canola	nucleus	65.89	66.75
GSMUA_Achr6P08090_001	Banana	nucleus	63.34	66.26
GSMUA_Achr10P...	Banana	nucleus	61.48	64.32
Bra035910.1-P	Field mustard	nucleus	65.78	63.85
CDY16798	Canola	nucleus	64.73	63.63
GSMUA_Achr6P16450_001	Banana	nucleus	61.83	61.05
GSMUA_AchrUn_...	Banana	nucleus	60.44	58.94
OQU83539	Sorghum	nucleus	53.71	56.81
Os01t0927600-01	Rice	nucleus	53.25	56.81
TraesCS3D01G434700.1	Wheat	nucleus	52.09	56.41
TraesCS3B01G475800.1	Wheat	nucleus	51.97	56.28
TraesCS3A01G442000.1	Wheat	nucleus	51.97	56.21
VIT_18s0089g00910.t01	Wine grape	nucleus	41.76	55.47
Os12t0479400-02	Rice	nucleus	54.06	55.41
Zm00001d011953_P002	Maize	nucleus	51.16	54.71
VIT_12s0035g01800.t01	Wine grape	nucleus	42.92	54.57
KXG34038	Sorghum	nucleus	51.28	54.57
Zm00001d042267_P003	Maize	nucleus	51.51	54.28
EES17013	Sorghum	nucleus	51.97	53.4
TraesCS3B01G486000.2	Wheat	nucleus	51.04	53.27
Zm00001d049295_P001	Maize	nucleus	54.06	53.2
TraesCS3A01G449300.3	Wheat	nucleus	51.04	53.08
Zm00001d023659_P007	Maize	nucleus	50.12	52.3
HORVU3Hr1G097200.10	Barley	nucleus	50.93	51.95
Zm00001d041056_P019	Maize	nucleus	50.7	51.78
VIT_02s0025g01740.t01	Wine grape	nucleus	40.72	51.47
HORVU3Hr1G096410.4	Barley	nucleus, plastid	47.22	50.62
VIT_15s0046g00290.t01	Wine grape	nucleus	40.72	50.0
TraesCS3D01G442000.7	Wheat	nucleus	51.16	49.77
HORVU3Hr1G096510.3	Barley	plastid	47.8	49.4
VIT_07s0104g01230.t01	Wine grape	nucleus	38.05	47.13
VIT_06s0004g03130.t01	Wine grape	nucleus	34.34	37.09
VIT_10s0003g04100.t01	Wine grape	nucleus	32.48	30.84
VIT_12s0028g01170.t01	Wine grape	nucleus	32.83	30.53
VIT_18s0001g13930.t01	Wine grape	nucleus	30.51	27.6
VIT_04s0079g00200.t01	Wine grape	nucleus	20.77	25.32
VIT_11s0065g00310.t01	Wine grape	nucleus	32.02	24.75
VIT_11s0016g00640.t01	Wine grape	nucleus	31.44	23.46

Protein Annotations

EntrezGene:100268072	wikigene:100268072	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CBI15749	ProteinID:CBI15749.3	UniProt:D7SH69
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100268072	wikigene:LOC100268072	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	TIGR:TC53717	TIGR:TC55121	UniParc:UPI00015C931A
ArrayExpress:VIT_17s0000g00320	EnsemblPlantsGene:VIT_17s0000g00320	EnsemblPlants:VIT_17s0000g00320.t01	RefSeq:XP_002284543	RefSeq:XP_002284543.1	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7SH69]

Coordinates

chr17:+:224860..230745

Molecular Weight (calculated)

96137.4 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.593

Length

862 amino acids

Sequence
(BLAST)

001: MASSEVSIKG NCGHGRGESF TSGYSEPNDG GVSRSVAEGQ KGHSSVSGAG KDFETALYTE LWHACAGPLV TVPRERERVF YFPQGHIEQV EASTNQVSDQ
101: QMPVYDLPSK ILCRVINVQL KAEPDTDEVF AQVTLLPEPN QDETAQEKEP LPPPPPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP QLDMSRQPPT
201: QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN VPSSVISSHS MHLGVLATAW HAKSTGTMFT
301: VYYKPRTSPA EFIVPFDQYM ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGIEDADPK RWRDSKWRCL KVRWDETSTI PRPDRVSPWK IEPAVTPPAL
401: NPLPVPRPKR PRSNMVPSSP DSSVLTREGS SKVTVDPSPA SGFSRVLQGQ EFSTLRGTFA ESNESDTAEK SVVWPPLLDD EKIDVVSTSR RFGSDNWMHL
501: VRHEPTCTDL LSGFGARTDS SHGFSSFVDQ NDVAANTMKK HLEHESKFNL LAGPWSMMPS GLSLNLLESS IKVPVQGSDM PYQTRGDARF GGFSEYPTLH
601: GHRVELQQGN WLMPPPAQSH FENFAHSREL MPKPILVQKQ EAVKPKDGNC KLFGIPLIGN PVISEPAMSY RSMTNEPAGH LHLAPSAFDS DQKSEQSKGA
701: KSTDNPLAVS EQEKPCQTSL PLSRDVQGKV QSVSTRSCTK VHKQGIALGR SVDLTKFNNY DELIAELDQL FEFGGELMAP KKNWLIVYTD DEGDMMLVGD
801: DPWQEFCGMV RKIYIYTREE VQRMNPGTLN SKNDDNPSVA EGMDAKEVKR QPVPLTSNLE NC

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.