Factsheet for Zm00001d011953_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008893_P001
Zm00001d039407_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Zm00001d008893_P001	AT4G18710.1	18599455
AT5G62000.1	Zm00001d039407_P001	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34038	Sorghum	nucleus	93.05	92.59
Zm00001d042267_P003	Maize	nucleus	90.69	89.36
TraesCS3D01G434700.1	Wheat	nucleus	77.17	78.14
Os01t0927600-01	Rice	nucleus	77.79	77.6
TraesCS3B01G475800.1	Wheat	nucleus	76.55	77.51
TraesCS3A01G442000.1	Wheat	nucleus	76.43	77.29
TraesCS3B01G486000.2	Wheat	nucleus	73.45	71.67
TraesCS3A01G449300.3	Wheat	nucleus	72.95	70.93
HORVU3Hr1G096410.4	Barley	nucleus, plastid	69.85	70.02
HORVU3Hr1G096510.3	Barley	plastid	71.09	68.7
HORVU3Hr1G097200.10	Barley	nucleus	71.84	68.52
TraesCS3D01G442000.7	Wheat	nucleus	72.83	66.25
VIT_01s0244g00150.t01	Wine grape	nucleus	50.37	52.8
CDX87230	Canola	nucleus	52.98	51.57
Solyc12g042070.1.1	Tomato	nucleus	52.73	51.33
VIT_17s0000g00320.t01	Wine grape	nucleus	54.71	51.16
KRH59742	Soybean	nucleus	54.34	51.05
KRH41062	Soybean	nucleus	53.85	51.0
AT5G62000.1	Thale cress	nucleus	54.34	50.99
PGSC0003DMT400036765	Potato	nucleus	53.35	50.89
Solyc03g118290.2.1	Tomato	nucleus	53.35	50.83
PGSC0003DMT400037454	Potato	nucleus	52.11	50.66
KRH63855	Soybean	nucleus	52.98	50.65
CDY67247	Canola	nucleus	53.35	50.53
Zm00001d050781_P001	Maize	nucleus	39.45	50.48
KRH54110	Soybean	nucleus	52.73	50.42
Bra010048.1-P	Field mustard	nucleus	52.98	50.18
CDY00245	Canola	nucleus	52.98	50.18
CDX86939	Canola	nucleus	52.48	49.76
CDY16798	Canola	nucleus	52.85	48.57
Bra035910.1-P	Field mustard	nucleus	53.47	48.54
Zm00001d049295_P001	Maize	nucleus	51.49	47.37
Zm00001d023659_P007	Maize	nucleus	48.39	47.22
Zm00001d003601_P006	Maize	nucleus	39.33	46.48
Zm00001d016838_P001	Maize	nucleus	39.95	45.8
Zm00001d041056_P019	Maize	nucleus	47.52	45.38
Zm00001d039267_P005	Maize	nucleus	30.65	35.69
Zm00001d001879_P036	Maize	nucleus	30.02	29.62
Zm00001d041497_P005	Maize	nucleus	31.02	28.15
Zm00001d031064_P003	Maize	nucleus	31.14	27.98
Zm00001d053819_P002	Maize	nucleus	31.76	27.86
Zm00001d014377_P002	Maize	nucleus	31.27	27.48
Zm00001d026590_P003	Maize	nucleus	28.04	26.65
Zm00001d036593_P001	Maize	plastid	31.27	26.25
Zm00001d001945_P002	Maize	nucleus	29.4	25.0
Zm00001d045026_P002	Maize	nucleus	32.38	24.79
Zm00001d031522_P007	Maize	nucleus	32.88	24.4
Zm00001d026540_P002	Maize	nucleus	28.66	24.09
Zm00001d014690_P014	Maize	nucleus	31.76	21.44
Zm00001d015243_P001	Maize	nucleus	28.41	20.97
Zm00001d052637_P001	Maize	mitochondrion	1.24	12.2

Protein Annotations

EntrezGene:100273501	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AQK98377.1
ProteinID:AQK98379.1	ProteinID:AQK98382.1	ProteinID:AQK98384.1	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd
EMBL:BT067605	UniProt:C0PH36	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EMBL:KJ726815	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000195CE96	EnsemblPlantsGene:Zm00001d011953
EnsemblPlants:Zm00001d011953_P002	EnsemblPlants:Zm00001d011953_T002	SEG:seg	:	:	:

Description

ARF-transcription factor 25Auxin response factor 2

Coordinates

chr8:-:164990904..164996249

Molecular Weight (calculated)

90235.9 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.635

Length

806 amino acids

Sequence
(BLAST)

001: MPPAAMALPS QAPSNSGDPL YPELWRACAG PLVTVPRVGD LVFYFPQGHI EQVEASMNQV AGNPMRLYDL PSKLLCRVLN VELKAETDTD EVYAQIMLMP
101: EPEQNDVAAE KTSSGSAAPP RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPALDMSQ SPPTQELVAK DLHGMEWRFR HIFRGQPRRH LLQSGWSVFV
201: SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QLSNVPSSVI SSQSMHLGVL ATAWHAINTK SMFTVYYKPR TSPSEFIIPY DQYMESVKNN YSIGMRFRMR
301: FEGEEAPEQR FTGTIVGCEN LDPLWPDSSW RYLKVRWDEP STIPRPDKVS PWKIEPASSP PVNPLPLSRG KRPRQNAPPP SPESSVLTKE GATKIDTDSA
401: QTPHQNSVLQ SQEQMSFRNN LTESTDSDST VQKQMMWSPS PNGKVHTNFQ PRPAMDNWMP LGRRETDFKD TRSAFKDART ASQSFGDTQG FFMQAYDDSR
501: HRLSFNNQFQ DQGSAHRFAD PYFYMPQQPS LTVESGTRTQ TANNDLRFWS ERNSMYGNPS DQQQGFSFGQ NTSSWLNQPL PQVEQSRVVR PHATVAPFDL
601: EKTREGSGFK IFGFQVDTTN PSPVQLSSPL SAIREHVVQT RPSAPVNELQ PVQIECLPEV SVSTAGTAAE NIQQVQQSSK DIQSKSQGAS TRSCTKVHKQ
701: GVALGRSVDL SKFTDYGELK AELDKMFEFE GELVSANRNW QIVYTDNEGD MMLVGDDPWE EFCNIVRKIY IYTKEEVQKM NSKSSVPRKE EPPAAGEGCA
801: AAAANE

Best Arabidopsis Sequence Match ( AT5G62000.1 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.