Factsheet for AT5G62000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86939	Canola	nucleus	87.08	88.0
Bra010048.1-P	Field mustard	nucleus	87.08	87.9
CDY00245	Canola	nucleus	86.96	87.78
CDX87230	Canola	nucleus	84.28	87.44
CDY67247	Canola	nucleus	84.28	85.08
CDY16798	Canola	nucleus	83.93	82.21
Bra035910.1-P	Field mustard	nucleus	84.87	82.09
Os11t0523800-01	Rice	nucleus	31.9	74.86
VIT_17s0000g00320.t01	Wine grape	nucleus	68.22	67.98
KRH41062	Soybean	nucleus	65.42	66.04
KRH59742	Soybean	nucleus	65.54	65.62
KRH63855	Soybean	nucleus	64.38	65.6
KRH54110	Soybean	nucleus	64.26	65.48
PGSC0003DMT400037454	Potato	nucleus	63.1	65.38
Solyc12g042070.1.1	Tomato	nucleus	62.51	64.86
Solyc03g118290.2.1	Tomato	nucleus	62.17	63.12
PGSC0003DMT400036765	Potato	nucleus	62.05	63.08
GSMUA_Achr6P08090_001	Banana	nucleus	57.04	59.47
GSMUA_Achr10P...	Banana	nucleus	55.76	58.13
GSMUA_Achr6P16450_001	Banana	nucleus	56.58	55.67
TraesCS3D01G434700.1	Wheat	nucleus	51.57	55.65
TraesCS3A01G442000.1	Wheat	nucleus	51.22	55.21
TraesCS3B01G475800.1	Wheat	nucleus	51.11	55.15
Zm00001d011953_P002	Maize	nucleus	50.99	54.34
KXG34038	Sorghum	nucleus	50.87	53.95
Os01t0927600-01	Rice	nucleus	50.64	53.84
GSMUA_AchrUn_...	Banana	nucleus	55.06	53.51
Zm00001d042267_P003	Maize	nucleus	50.52	53.06
OQU83539	Sorghum	nucleus	50.17	52.88
TraesCS3B01G486000.2	Wheat	nucleus	49.59	51.57
Os12t0479400-02	Rice	nucleus	50.29	51.37
TraesCS3A01G449300.3	Wheat	nucleus	49.48	51.27
AT1G59750.1	Thale cress	nucleus	39.35	50.83
HORVU3Hr1G097200.10	Barley	nucleus	49.36	50.18
HORVU3Hr1G096410.4	Barley	nucleus, plastid	46.8	50.0
AT3G61830.1	Thale cress	nucleus	34.81	49.67
AT4G23980.1	Thale cress	nucleus	36.67	49.37
Zm00001d049295_P001	Maize	nucleus	50.29	49.32
EES17013	Sorghum	nucleus	47.96	49.11
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	35.27	48.71
HORVU3Hr1G096510.3	Barley	plastid	47.26	48.68
Zm00001d023659_P007	Maize	nucleus	46.45	48.31
TraesCS3D01G442000.7	Wheat	nucleus	49.59	48.08
Zm00001d041056_P019	Maize	nucleus	46.91	47.75
AT1G34310.1	Thale cress	nucleus	29.57	42.83
AT1G35540.1	Thale cress	nucleus	30.15	42.81
AT1G34390.1	Thale cress	nucleus	29.45	42.31
AT1G35240.1	Thale cress	nucleus	28.87	41.89
AT1G35520.1	Thale cress	nucleus	28.75	41.65
AT1G34410.1	Thale cress	nucleus	29.22	41.42
AT1G34170.3	Thale cress	nucleus	25.38	39.93
AT5G60450.1	Thale cress	nucleus	32.48	35.41
AT5G37020.1	Thale cress	nucleus	30.38	32.18
AT1G30330.3	Thale cress	nucleus	32.48	29.84
AT1G19850.1	Thale cress	nucleus	28.87	27.49
AT1G19220.1	Thale cress	nucleus	31.78	25.14
AT5G20730.1	Thale cress	nucleus	31.2	23.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:836321	ProteinID:AED97548.1
ProteinID:AED97549.1	ProteinID:AED97550.1	EMBL:AF336918	EMBL:AF378862	EMBL:AJ441313	EMBL:AJ458328
EMBL:AK221252	EMBL:AK221254	EMBL:AK221274	EMBL:AK221277	EMBL:AK221282	EMBL:AK221305
ProteinID:ANM68885.1	Symbol:ARF2	ArrayExpress:AT5G62000	EnsemblPlantsGene:AT5G62000	RefSeq:AT5G62000	TAIR:AT5G62000
RefSeq:AT5G62000-TAIR-G	EnsemblPlants:AT5G62000.1	TAIR:AT5G62000.1	InterPro:AUX/IAA_dom	EMBL:AY669787	Unigene:At.21704
InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAB10162.1	EMBL:BT000784	EMBL:BT001072	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009737	GO:GO:0009791	GO:GO:0009838	GO:GO:0009908	GO:GO:0009911
GO:GO:0009987	GO:GO:0010047	GO:GO:0010150	GO:GO:0010227	GO:GO:0043565	GO:GO:0045892
GO:GO:0048481	GO:GO:1903288	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_001330603.1
RefSeq:NP_201006.2	RefSeq:NP_851244.1	RefSeq:NP_974980.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0006203
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009015	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020133	PO:PO:0020137	PO:PO:0020149	PO:PO:0025022	PO:PO:0025281
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	UniProt:Q94JM3	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EMBL:U89771	UniParc:UPI00000AC25B	SEG:seg	:

Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]

Coordinates

chr5:+:24910209..24915378

Molecular Weight (calculated)

95705.9 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.696

Length

859 amino acids

Sequence
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.