Factsheet for Bra035910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012581.1-P
Bra013341.1-P
Bra020994.1-P
Bra026166.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Bra026166.1-P	AT1G15050.1	21734647
AT5G62000.1	Bra012581.1-P	AT4G18710.1	18599455
AT5G62000.1	Bra013341.1-P	AT4G18710.1	18599455
AT5G62000.1	Bra020994.1-P	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16798	Canola	nucleus	94.71	95.9
AT5G62000.1	Thale cress	nucleus	82.09	84.87
Bra010048.1-P	Field mustard	nucleus	80.74	84.25
Os11t0523800-01	Rice	nucleus	29.84	72.4
VIT_17s0000g00320.t01	Wine grape	nucleus	63.85	65.78
KRH63855	Soybean	nucleus	60.47	63.7
KRH54110	Soybean	nucleus	60.14	63.35
KRH41062	Soybean	nucleus	60.59	63.22
PGSC0003DMT400037454	Potato	nucleus	59.01	63.21
Solyc12g042070.1.1	Tomato	nucleus	58.67	62.92
KRH59742	Soybean	nucleus	60.47	62.59
Solyc03g118290.2.1	Tomato	nucleus	58.11	60.99
PGSC0003DMT400036765	Potato	nucleus	58.0	60.95
GSMUA_Achr6P08090_001	Banana	nucleus	53.27	57.4
GSMUA_Achr10P...	Banana	nucleus	51.35	55.34
TraesCS3A01G442000.1	Wheat	nucleus	48.87	54.45
TraesCS3D01G434700.1	Wheat	nucleus	48.76	54.4
TraesCS3B01G475800.1	Wheat	nucleus	48.42	54.02
KXG34038	Sorghum	nucleus	48.99	53.7
GSMUA_Achr6P16450_001	Banana	nucleus	52.7	53.61
Zm00001d011953_P002	Maize	nucleus	48.54	53.47
Os01t0927600-01	Rice	nucleus	48.09	52.85
OQU83539	Sorghum	nucleus	48.42	52.76
Bra004530.1-P	Field mustard	nucleus	34.57	52.57
Zm00001d042267_P003	Maize	nucleus	48.31	52.45
Bra014419.1-P	Field mustard	nucleus	32.55	52.07
GSMUA_AchrUn_...	Banana	nucleus	51.35	51.58
Bra013748.1-P	Field mustard	nucleus	34.91	51.49
Os12t0479400-02	Rice	nucleus	48.31	51.01
Bra019255.1-P	Field mustard	nucleus	35.36	50.4
TraesCS3B01G486000.2	Wheat	nucleus	46.85	50.36
TraesCS3A01G449300.3	Wheat	nucleus	46.96	50.3
Bra035427.1-P	Field mustard	nucleus	37.61	50.23
HORVU3Hr1G097200.10	Barley	nucleus	46.73	49.11
HORVU3Hr1G096410.4	Barley	nucleus, plastid	44.26	48.88
EES17013	Sorghum	nucleus	45.83	48.51
Zm00001d049295_P001	Maize	nucleus	47.3	47.95
Zm00001d023659_P007	Maize	nucleus	44.48	47.82
HORVU3Hr1G096510.3	Barley	plastid	44.48	47.36
TraesCS3D01G442000.7	Wheat	nucleus	46.96	47.07
Zm00001d041056_P019	Maize	nucleus	44.48	46.8
Bra025775.1-P	Field mustard	nucleus	23.31	44.04
Bra034234.1-P	Field mustard	nucleus	24.21	39.74
Bra027944.1-P	Field mustard	nucleus	23.76	38.43
Bra018124.1-P	Field mustard	nucleus	23.2	37.12
Bra017362.1-P	Field mustard	nucleus	22.52	37.04
Bra002479.1-P	Field mustard	nucleus	30.29	35.49
Bra004125.1-P	Field mustard	nucleus	29.05	33.08
Bra010776.1-P	Field mustard	nucleus	29.73	31.73
Bra028110.1-P	Field mustard	nucleus	28.94	30.45
Bra016492.1-P	Field mustard	nucleus	27.03	28.71
Bra012190.1-P	Field mustard	nucleus	27.36	28.03
Bra007632.1-P	Field mustard	nucleus	32.88	27.68
Bra025720.1-P	Field mustard	nucleus	30.18	25.55
Bra016517.1-P	Field mustard	nucleus	28.6	25.15
Bra020125.1-P	Field mustard	nucleus	29.05	23.45
Bra002327.1-P	Field mustard	nucleus	29.05	17.93

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01295	ProteinID:AFD01295.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra035910	EnsemblPlants:Bra035910.1	EnsemblPlants:Bra035910.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4C2	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979461	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	SignalP:SignalP-noTM	UniParc:UPI0002535789	SEG:seg	:

Description

AT5G62000 (E=0.0) ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor

Coordinates

chrA09:+:2947246..2951764

Molecular Weight (calculated)

99050.1 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.617

Length

888 amino acids

Sequence
(BLAST)

001: MVMISILLNL PYVCNSDKRA EEDEDESRSC HISKSRFDSR VSSSLLALLD ETDLRCMTSS EALNVAVSGE GQKGHSSRVV DAEAALYREL WHACAGPLVT
101: VPRQDDRVFY FPQGHIEQVE ASTNQAAEQQ MPLYDLPSKI LCRVINVDLK AEVDSDEVYA QITLLPEAIQ DENAIEKEAP PPPPPRFQVH SFCKTLTASD
201: TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHAN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNV
301: SSSVISSHSM HLGVLATAWH AISTGTMFSV YYKPRTSPSE FIVPFDQYME SVKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPTR WAKSKWRSLK
401: VRWDETSSIP RPDRVSPWKL EPALAPPALS PVPMPRPKRP RSNIAPSSPD SSVLIREGSA MGNKDPLPAS GLSRVLQGQE HPTLRTKHTE TVECDAPESS
501: VVWQSSADDD KVDVVSASAS RRYENWMSSG RHESAYTDLL SGFGANIDPS PGHQIPFYDH SSLPFVAANK FIGDRDGKFD YFANQWQMMH SGLSLTLHES
601: PKIPAASDTS FQGGRGNAKY GEYPGLHSLT TENAGGNWPI RPRAVNYFEE AVQAHAQAQA REHVTKRPEM VEDTAKSRDG NCRLFGIPLV NNVNVTESTM
701: SPRNNFNDTA GLTQMTSPKV QDLSDQSKGS KSTNDQREQG RPFQANHHPH PKDVHTKTHS SRSCTKVQKQ GIALGRSVDL SKFQNYEELI AELDRMFEFN
801: GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCGMVRKIS IYTKEEVRKM NPGTLSCRSE EEAVVGEGSD PKDAKSASNP SLSSAGHS

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.