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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra002479.1-P
Bra003484.1-P
Bra007632.1-P
Bra007661.1-P
Bra009867.1-P
Bra011332.1-P
Bra014303.1-P
Bra014411.1-P
Bra014419.1-P
Bra015289.1-P
Bra015298.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra023958.1-P
Bra024406.1-P
Bra026166.1-P
Bra026755.1-P
Bra027232.1-P
Bra027504.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G15050.1 Bra015289.1-P AT1G04100.1 21734647
AT1G15050.1 Bra015298.1-P AT1G04250.1 21734647
AT1G15050.1 Bra030560.1-P AT1G04250.1 21734647
AT1G15050.1 Bra032520.1-P AT1G04250.1 21734647
AT1G15050.1 Bra026166.1-P AT1G15050.1 21734647
AT1G15050.1 Bra026755.1-P AT1G15580.1 21734647
AT1G15050.1 Bra017362.1-P AT1G34390.1 21734647
AT1G15050.1 Bra018124.1-P AT1G34390.1 21734647
AT1G15050.1 Bra027944.1-P AT1G34390.1 21734647
AT1G15050.1 Bra034234.1-P AT1G34390.1 21734647
AT1G15050.1 Bra014303.1-P AT1G51950.1 21734647
AT1G15050.1 Bra018938.1-P AT1G51950.1 21734647
AT1G15050.1 Bra040476.1-P AT2G46990.1 21734647
AT1G15050.1 Bra001598.1-P AT3G15540.1 21734647
AT1G15050.1 Bra021117.1-P AT3G15540.1 21734647
AT1G15050.1 Bra027232.1-P AT3G15540.1 21734647
AT1G15050.1 Bra001670.1-P AT3G17600.1 21734647
AT1G15050.1 Bra021257.1-P AT3G17600.1 21734647
AT1G15050.1 Bra022224.1-P AT3G17600.1 21734647
AT1G15050.1 Bra001900.1-P AT3G23050.1 21734647
AT1G15050.1 Bra033886.1-P AT3G23050.1 21734647
AT1G15050.1 Bra007632.1-P AT3G61830.1 21734647
AT1G15050.1 Bra014419.1-P AT3G61830.1 21734647
AT1G15050.1 Bra003484.1-P AT3G62100.1 21734647
AT1G15050.1 Bra007661.1-P AT3G62100.1 21734647
AT1G15050.1 Bra014411.1-P AT3G62100.1 21734647
AT1G15050.1 Bra039732.1-P AT4G14560.1 21734647
AT1G15050.1 Bra011332.1-P AT4G32280.1 21734647
AT1G15050.1 Bra023958.1-P AT4G32280.1 21734647
AT1G15050.1 Bra009867.1-P AT5G25890.1 21734647
AT1G15050.1 Bra036557.1-P AT5G25890.1 21734647
AT1G15050.1 Bra027504.1-P AT5G43700.1 21734647
AT1G15050.1 Bra002479.1-P AT5G60450.1 21734647
AT1G15050.1 Bra024406.1-P AT5G65670.1 21734647
AT1G15050.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY36527 Canola cytosol 98.17 98.17
CDY39608 Canola cytosol 95.73 95.73
AT1G15050.1 Thale cress nucleus 62.8 55.68
Bra024898.1-P Field mustard cytosol 46.34 45.51
KRG90903 Soybean nucleus 45.73 39.47
KRH35895 Soybean nucleus 45.12 38.74
VIT_01s0011g04070.t01 Wine grape nucleus 45.73 37.13
Solyc05g008850.2.1 Tomato nucleus 41.46 36.17
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra026166EnsemblPlants:Bra026166.1
EnsemblPlants:Bra026166.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4EBK7InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF29SUPFAM:SSF54277UniParc:UPI000253EFC1::
Description
AT1G15050 (E=5e-045) IAA34 | IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor
Coordinates
chrA06:-:5785115..5786394
Molecular Weight (calculated)
18835.3 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.677
Length
164 amino acids
Sequence
(BLAST)
001: MECGSVIDLG LSLRTIQHEP YHTSGQSVGG YREVTDDLKS NRGEFLQKRH ETRNGRCGKE CGSNEGGRKK WGYVKVTMDG FVVGRKVCVL DHGGHSTLAH
101: QLEDMFGMQS VTGLRLFERE SEFSLVYKDK EGTWRNAEDV SWKELVENVE RLRITRRNDF LLFF
Best Arabidopsis Sequence Match ( AT1G15050.1 )
(BLAST)
001: MYCSDPPHPL HLVASDKQQK DHKLILSWKK PTMDSDPLGV FPNSPKYHPY YSQTTEFGGV IDLGLSLRTI QHEIYHSSGQ RYCSNEGYRR KWGYVKVTMD
101: GLVVGRKVCV LDHGSYSTLA HQLEDMFGMQ SVSGLRLFQM ESEFCLVYRD EEGLWRNAGD VPWNEFIESV ERLRITRRND AVLPF
Arabidopsis Description
IAA34Auxin-responsive protein IAA34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.