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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra002479.1-P
Bra003518.1-P nucleus
Bra007720.1-P nucleus
Bra011332.1-P
Bra011955.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014378.1-P nucleus
Bra015298.1-P
Bra016492.1-P
Bra018938.1-P
Bra019255.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra023958.1-P
Bra024406.1-P
Bra025775.1-P
Bra027232.1-P
Bra027504.1-P
Bra030560.1-P
Bra032520.1-P
Bra035185.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04250.1 Bra015298.1-P AT1G04250.1 21734647
AT1G04250.1 Bra030560.1-P AT1G04250.1 21734647
AT1G04250.1 Bra032520.1-P AT1G04250.1 21734647
AT1G04250.1 Bra012190.1-P AT1G19850.1 22096563
AT1G04250.1 Bra016492.1-P AT1G19850.1 22096563
AT1G04250.1 Bra025775.1-P AT1G19850.1 22096563
AT1G04250.1 Bra014303.1-P AT1G51950.1 21734647
AT1G04250.1 Bra018938.1-P AT1G51950.1 21734647
AT1G04250.1 Bra035185.1-P AT1G80390.1 21734647
AT1G04250.1 Bra011955.1-P AT2G28350.1 21734647
AT1G04250.1 Bra040122.1-P AT3G04730.1 21734647
AT1G04250.1 Bra040398.1-P AT3G04730.1 21734647
AT1G04250.1 Bra001598.1-P AT3G15540.1 21734647
AT1G04250.1 Bra021117.1-P AT3G15540.1 21734647
AT1G04250.1 Bra027232.1-P AT3G15540.1 21734647
AT1G04250.1 Bra001634.1-P AT3G16500.1 21734647
AT1G04250.1 Bra021184.1-P AT3G16500.1 21734647
AT1G04250.1 Bra022164.1-P AT3G16500.1 21734647
AT1G04250.1 Bra001670.1-P AT3G17600.1 21734647
AT1G04250.1 Bra021257.1-P AT3G17600.1 21734647
AT1G04250.1 Bra022224.1-P AT3G17600.1 21734647
AT1G04250.1 Bra003518.1-P AT3G62980.1 11713520
AT1G04250.1 Bra007720.1-P AT3G62980.1 11713520
AT1G04250.1 Bra014378.1-P AT3G62980.1 11713520
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra039732.1-P AT4G14560.1 9342315
AT1G04250.1 Bra013748.1-P AT4G23980.1 21734647
AT1G04250.1 Bra019255.1-P AT4G23980.1 21734647
AT1G04250.1 Bra011332.1-P AT4G32280.1 21734647
AT1G04250.1 Bra023958.1-P AT4G32280.1 21734647
AT1G04250.1 Bra027504.1-P AT5G43700.1 21734647
AT1G04250.1 Bra002479.1-P AT5G60450.1 21734647
AT1G04250.1 Bra024406.1-P AT5G65670.1 21734647
AT1G04250.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15493 Canola cytosol, nucleus, plastid 99.13 99.13
AT1G04250.1 Thale cress cytosol, nucleus, plastid 89.08 89.08
Bra032520.1-P Field mustard nucleus 87.77 88.55
Bra015298.1-P Field mustard nucleus 86.03 87.95
Bra039855.1-P Field mustard nucleus 67.69 66.52
KRH34377 Soybean nucleus 67.69 64.85
VIT_05s0020g04690.t01 Wine grape cytosol, nucleus, plastid 68.12 64.2
Solyc09g083290.2.1 Tomato nucleus 65.94 63.98
PGSC0003DMT400015610 Potato nucleus 65.5 63.03
Bra001900.1-P Field mustard cytosol, nucleus, plastid 65.07 62.87
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 65.5 61.98
Bra040398.1-P Field mustard nucleus 61.14 60.61
GSMUA_Achr10P... Banana nucleus 62.01 58.92
Bra040122.1-P Field mustard nucleus 56.77 57.78
GSMUA_Achr9P25550_001 Banana nucleus 60.7 57.2
GSMUA_Achr8P20610_001 Banana nucleus 60.7 56.97
GSMUA_Achr4P21020_001 Banana nucleus 60.26 55.65
Bra001899.1-P Field mustard nucleus 40.61 54.39
Bra033890.1-P Field mustard nucleus 40.61 54.07
Bra023771.1-P Field mustard nucleus 40.17 53.8
GSMUA_Achr9P10700_001 Banana nucleus 56.33 53.53
TraesCS5B01G058500.1 Wheat nucleus 57.21 51.98
TraesCS5D01G069300.1 Wheat nucleus 57.21 51.98
Os03t0633500-01 Rice cytosol 52.84 51.93
EER90896 Sorghum nucleus 53.28 51.91
Zm00001d033976_P002 Maize nucleus 53.71 51.9
TraesCS5A01G058600.1 Wheat nucleus 57.21 51.78
Bra015297.1-P Field mustard cytosol, nucleus, plastid 41.48 51.08
TraesCS5D01G392000.1 Wheat nucleus 50.66 50.0
Os03t0742900-01 Rice vacuole 51.53 50.0
GSMUA_Achr4P22520_001 Banana nucleus 55.02 49.8
TraesCS5A01G382600.1 Wheat nucleus 50.66 49.79
Bra037824.1-P Field mustard plastid 42.36 49.74
TraesCS5B01G386800.1 Wheat nucleus 50.66 49.57
Bra026755.1-P Field mustard nucleus 33.62 49.36
Bra027504.1-P Field mustard nucleus 41.05 49.21
Zm00001d013302_P002 Maize nucleus 48.91 49.12
Bra039732.1-P Field mustard nucleus 36.68 49.12
HORVU5Hr1G094220.1 Barley nucleus 50.66 48.95
EES17334 Sorghum cytosol 59.83 48.75
TraesCS5B01G381900.1 Wheat cytosol, mitochondrion, nucleus 53.71 48.62
Bra032521.1-P Field mustard nucleus 37.99 48.33
OQU91311 Sorghum cytosol, mitochondrion, nucleus 55.46 48.11
KRG92429 Soybean cytosol, nucleus, plastid 69.43 48.04
Os12t0601300-01 Rice nucleus 58.08 48.01
HORVU5Hr1G014300.4 Barley nucleus 57.21 47.46
Bra001598.1-P Field mustard nucleus 40.17 47.42
Bra027232.1-P Field mustard nucleus 38.43 45.36
Bra024406.1-P Field mustard nucleus 44.98 44.21
Bra021117.1-P Field mustard cytosol, nucleus, plastid 37.12 43.15
HORVU5Hr1G093580.2 Barley cytosol, nucleus, peroxisome 50.66 41.28
Bra018993.1-P Field mustard nucleus 35.81 40.39
Bra011082.1-P Field mustard nucleus 50.66 40.0
Bra030219.1-P Field mustard nucleus 44.98 38.72
Bra031850.1-P Field mustard mitochondrion 48.47 38.01
TraesCS5A01G378300.2 Wheat cytosol, mitochondrion, nucleus 49.78 37.38
TraesCS5D01G388300.2 Wheat cytosol 51.09 37.14
Zm00001d041416_P001 Maize nucleus 55.46 36.92
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra030560EnsemblPlants:Bra030560.1
EnsemblPlants:Bra030560.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4EP40InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF28SUPFAM:SSF54277UniParc:UPI00025458A9::
Description
AT1G04250 (E=4e-119) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor
Coordinates
chrA08:-:21312892..21314468
Molecular Weight (calculated)
25095.0 Da
IEP (calculated)
7.815
GRAVY (calculated)
-0.515
Length
229 amino acids
Sequence
(BLAST)
001: MMGSVGLNLR ETELCLGLPG GDTASPVTGT KRGFSETVDL KLNLNNEPES KEGSKSHDVV SAISKEKSSC PKDPTKPPAK AQVVGWPPVR SYRKNVMGSC
101: QKSSSSADTA AFVKVSMDGA PYLRKIDLKM YKSYDELSDA LSNMFSSFTM GKNGGEEGMI DFMNERKVMD TVSSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.