Factsheet for Bra032521.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10069	Canola	nucleus	93.89	91.85
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	83.89	81.18
KRH34375	Soybean	cytosol, nucleus	50.0	73.77
Bra027504.1-P	Field mustard	nucleus	73.33	69.11
Bra033890.1-P	Field mustard	nucleus	63.89	66.86
Bra001899.1-P	Field mustard	nucleus	62.78	66.08
Bra023771.1-P	Field mustard	nucleus	62.78	66.08
Solyc06g053840.2.1	Tomato	nucleus	65.0	61.58
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	65.0	61.58
Bra039732.1-P	Field mustard	nucleus	57.22	60.23
Solyc09g083280.2.1	Tomato	nucleus	65.0	59.69
PGSC0003DMT400015655	Potato	nucleus	64.44	59.49
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	53.33	58.54
Solyc04g054280.1.1	Tomato	nucleus	53.33	57.83
KRG92430	Soybean	nucleus	62.22	57.73
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	43.33	57.35
KRH69048	Soybean	nucleus	60.0	56.25
GSMUA_Achr4P05200_001	Banana	mitochondrion	38.89	56.0
VIT_05s0020g04680.t01	Wine grape	nucleus	52.22	55.95
GSMUA_Achr5P03110_001	Banana	nucleus	51.11	54.76
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	85.0	52.94
GSMUA_Achr4P22530_001	Banana	nucleus	52.22	51.93
GSMUA_Achr9P24330_001	Banana	nucleus	48.33	50.88
GSMUA_Achr11P...	Banana	nucleus	48.89	50.57
GSMUA_Achr8P20620_001	Banana	nucleus	50.0	47.87
GSMUA_Achr4P21030_001	Banana	nucleus	52.22	47.47
Bra026755.1-P	Field mustard	nucleus	40.56	46.79
Os12t0601400-01	Rice	nucleus	51.11	46.7
GSMUA_Achr2P12630_001	Banana	nucleus	51.67	45.81
EER98076	Sorghum	cytosol, mitochondrion, nucleus	50.0	45.23
TraesCS5A01G058700.1	Wheat	cytosol	52.78	44.39
TraesCS5B01G058800.1	Wheat	cytosol	52.78	44.39
TraesCS5D01G069200.1	Wheat	cytosol	52.78	44.39
Zm00001d013071_P001	Maize	nucleus	44.44	44.2
Zm00001d018973_P001	Maize	nucleus	48.89	43.56
Bra001598.1-P	Field mustard	nucleus	46.67	43.3
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	47.22	43.15
TraesCS5D01G449400.1	Wheat	nucleus	43.33	43.09
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	42.22	42.94
EER90734	Sorghum	cytosol, nucleus, plastid	43.89	42.47
Bra027232.1-P	Field mustard	nucleus	45.56	42.27
Bra040122.1-P	Field mustard	nucleus	52.78	42.22
Bra040398.1-P	Field mustard	nucleus	52.22	40.69
Zm00001d041418_P001	Maize	nucleus	51.67	40.43
EER93778	Sorghum	cytosol, nucleus, plastid	50.56	40.27
TraesCS5D01G388200.1	Wheat	nucleus	47.78	40.0
Os03t0633800-01	Rice	nucleus	49.44	39.38
Bra037824.1-P	Field mustard	plastid	42.22	38.97
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.22	38.84
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	51.11	38.82
Zm00001d030993_P001	Maize	nucleus	42.78	38.69
TraesCS5B01G381800.1	Wheat	nucleus	45.56	38.68
TraesCS5A01G378200.1	Wheat	nucleus	45.56	38.68
Os03t0797800-01	Rice	nucleus	42.22	38.58
Zm00001d033319_P001	Maize	nucleus	48.33	38.5
Bra018993.1-P	Field mustard	nucleus	43.33	38.42
Zm00001d013707_P001	Maize	nucleus	47.78	38.39
Os07t0182400-01	Rice	plastid	46.67	38.36
Bra039855.1-P	Field mustard	nucleus	49.44	38.2
EES16315	Sorghum	cytosol	51.67	38.11
Bra030560.1-P	Field mustard	nucleus	48.33	37.99
Bra015298.1-P	Field mustard	nucleus	47.22	37.95
Bra032520.1-P	Field mustard	nucleus	47.78	37.89
HORVU5Hr1G106350.2	Barley	plastid	43.33	34.67
Bra030219.1-P	Field mustard	nucleus	48.89	33.08
Bra024406.1-P	Field mustard	nucleus	42.78	33.05
Bra011082.1-P	Field mustard	nucleus	51.67	32.07
HORVU5Hr1G014290.1	Barley	mitochondrion	45.0	31.64
Bra031850.1-P	Field mustard	mitochondrion	48.33	29.79
HORVU5Hr1G093640.1	Barley	mitochondrion	49.44	28.34
Zm00001d034463_P001	Maize	extracellular, golgi	43.33	24.38

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra032521	EnsemblPlants:Bra032521.1
EnsemblPlants:Bra032521.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4EUN9	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF11	SUPFAM:SSF54277	UniParc:UPI0002543622	:	:

Description

AT1G04240 (E=9e-088) SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); transcription factor

Coordinates

chrA09:+:36426915..36427648

Molecular Weight (calculated)

20364.0 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.722

Length

180 amino acids

Sequence
(BLAST)

001: MDEFVNLKAT ELRLGLPGTN NVCEERVSCN SNNNKRALQA DAENETETSP PRKTQIVGWP PVRSYRKNNV QTKKNESDGE SQGIYVKVSM DGAPYLRKID
101: LSCYKGYSDL LKALELMFEF SVGEYSERDG YKGSDFVPTY EDKDGDWMLI GDVPWEMFEC NCKRLRIMKG SEAKCLGSGV

Best Arabidopsis Sequence Match ( AT1G04240.2 )
(BLAST)

001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.