Factsheet for Bra030219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002327.1-P	nucleus
Bra002479.1-P	nucleus
Bra003518.1-P	nucleus
Bra004530.1-P	nucleus
Bra007720.1-P	nucleus
Bra011162.1-P	nucleus
Bra012190.1-P	nucleus
Bra014378.1-P	nucleus
Bra016492.1-P	nucleus
Bra016517.1-P	nucleus
Bra020125.1-P	nucleus
Bra024109.1-P	nucleus
Bra025720.1-P	nucleus
Bra025775.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22670.4	Bra016517.1-P	AT1G19220.1	22912871
AT2G22670.4	Bra025720.1-P	AT1G19220.1	22912871
AT2G22670.4	Bra016517.1-P	AT1G19220.1	22912871
AT2G22670.4	Bra025720.1-P	AT1G19220.1	22912871
AT2G22670.4	Bra012190.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra016492.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra025775.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra012190.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra016492.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra025775.1-P	AT1G19850.1	22912871
AT2G22670.4	Bra004530.1-P	AT2G46530.3	22912871
AT2G22670.4	Bra004530.1-P	AT2G46530.3	22912871
AT2G22670.4	Bra003518.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra007720.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra014378.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra003518.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra007720.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra014378.1-P	AT3G62980.1	22912871
AT2G22670.4	Bra011162.1-P	AT4G30080.1	22912871
AT2G22670.4	Bra024109.1-P	AT4G30080.1	22912871
AT2G22670.4	Bra011162.1-P	AT4G30080.1	22912871
AT2G22670.4	Bra024109.1-P	AT4G30080.1	22912871
AT2G22670.4	Bra002327.1-P	AT5G20730.1	22912871
AT2G22670.4	Bra020125.1-P	AT5G20730.1	22912871
AT2G22670.4	Bra002327.1-P	AT5G20730.1	22912871
AT2G22670.4	Bra020125.1-P	AT5G20730.1	22912871
AT2G22670.4	Bra002479.1-P	AT5G60450.1	22912871
AT2G22670.4	Bra002479.1-P	AT5G60450.1	22912871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25617	Canola	nucleus	98.87	98.87
CDX89499	Canola	nucleus	96.24	94.46
AT2G22670.4	Thale cress	nucleus	89.1	70.12
KRH75635	Soybean	nucleus	69.92	58.86
Bra037824.1-P	Field mustard	plastid	42.48	57.95
KRH39524	Soybean	nucleus	71.8	53.95
KRH74432	Soybean	nucleus	71.8	53.2
Bra024406.1-P	Field mustard	nucleus	46.24	52.79
KRH45470	Soybean	nucleus	68.42	52.0
Solyc04g076850.2.1	Tomato	nucleus	67.29	51.29
Bra033890.1-P	Field mustard	nucleus	33.08	51.16
PGSC0003DMT400016356	Potato	nucleus	66.92	51.0
Bra023771.1-P	Field mustard	nucleus	32.71	50.88
Bra001899.1-P	Field mustard	nucleus	32.71	50.88
Bra031850.1-P	Field mustard	mitochondrion	55.64	50.68
Bra032521.1-P	Field mustard	nucleus	33.08	48.89
KRH72523	Soybean	nucleus	66.92	48.63
KRH62157	Soybean	nucleus	65.79	48.61
Bra027504.1-P	Field mustard	nucleus	34.59	48.17
KRH16912	Soybean	nucleus	66.17	47.96
Bra040398.1-P	Field mustard	nucleus	41.35	47.62
Bra026755.1-P	Field mustard	nucleus	27.82	47.44
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	33.08	47.31
Bra011082.1-P	Field mustard	nucleus	51.5	47.24
Bra039732.1-P	Field mustard	nucleus	30.08	46.78
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	41.35	46.41
KRH52867	Soybean	nucleus	62.41	45.6
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.35	45.45
Bra040122.1-P	Field mustard	nucleus	38.35	45.33
Bra015298.1-P	Field mustard	nucleus	37.97	45.09
Bra039855.1-P	Field mustard	nucleus	39.47	45.06
Bra030560.1-P	Field mustard	nucleus	38.72	44.98
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	69.17	44.88
Bra032520.1-P	Field mustard	nucleus	37.97	44.49
Bra001598.1-P	Field mustard	nucleus	31.58	43.3
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	31.58	42.64
Bra027232.1-P	Field mustard	nucleus	30.08	41.24
Bra018993.1-P	Field mustard	nucleus	30.45	39.9

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra030219	EnsemblPlants:Bra030219.1
EnsemblPlants:Bra030219.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009719	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987	GO:GO:0010311
GO:GO:0045892	GO:GO:1901332	InterPro:IPR000270	UniProt:M4EN49	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF24	SUPFAM:SSF54277	UniParc:UPI0002544215	:

Description

AT2G22670 (E=1e-083) IAA8 | IAA8; transcription factor

Coordinates

chrA04:+:9878787..9879905

Molecular Weight (calculated)

29281.9 Da

IEP (calculated)

8.759

GRAVY (calculated)

-0.504

Length

266 amino acids

Sequence
(BLAST)

001: MSYQLLSVDK EGLATSPGLK ERNYMGLSDC SSVDSSTIPN VDKKSSLNFK ATELRLGLPE SSQSPQRETD FGLLSPRTPD EKLLFPLLPC KDHASGNKRG
101: YLAKSGSNNA PASKAQVVGW PPIRSYRKNT MASSTSKNTN EVGLGPLFVK VSMDGAPYLR KVDLRTYTCY QHLSSALEKM FSCFTLGQCG LHGAHGRERM
201: SEVKLKDLLH GSEFVLTYED KDGDWMLVGD VPWEIFTESC RKLKIMKGSD SIGLAPSAVE KSKNKD

Best Arabidopsis Sequence Match ( AT2G22670.4 )
(BLAST)

001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV

Arabidopsis Description

IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.