Factsheet for VIT_18s0001g08090.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g03130.t01	nucleus
VIT_07s0104g01320.t01	nucleus
VIT_11s0016g00640.t01	nucleus, nucleus
VIT_13s0019g04380.t01	nucleus
VIT_15s0046g00290.t01	nucleus
VIT_18s0001g13930.t01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22670.4	VIT_11s0016g00640.t01	AT1G19220.1	22912871
AT2G22670.4	VIT_11s0016g00640.t01	AT1G19220.1	22912871
AT2G22670.4	VIT_18s0001g13930.t01	AT1G19850.1	22912871
AT2G22670.4	VIT_18s0001g13930.t01	AT1G19850.1	22912871
AT2G22670.4	VIT_15s0046g00290.t01	AT2G46530.3	22912871
AT2G22670.4	VIT_15s0046g00290.t01	AT2G46530.3	22912871
AT2G22670.4	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT2G22670.4	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT2G22670.4	VIT_13s0019g04380.t01	AT4G30080.1	22912871
AT2G22670.4	VIT_13s0019g04380.t01	AT4G30080.1	22912871
AT2G22670.4	VIT_11s0016g00640.t01	AT5G20730.1	22912871
AT2G22670.4	VIT_11s0016g00640.t01	AT5G20730.1	22912871
AT2G22670.4	VIT_06s0004g03130.t01	AT5G60450.1	22912871
AT2G22670.4	VIT_06s0004g03130.t01	AT5G60450.1	22912871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076850.2.1	Tomato	nucleus	63.17	74.21
PGSC0003DMT400016356	Potato	nucleus	62.2	73.07
KRH62157	Soybean	nucleus	61.95	70.56
KRH16912	Soybean	nucleus	62.44	69.75
KRH72523	Soybean	nucleus	62.2	69.67
Bra030219.1-P	Field mustard	nucleus	44.88	69.17
CDY25617	Canola	nucleus	44.88	69.17
KRH52867	Soybean	nucleus	59.76	67.31
CDX89499	Canola	nucleus	43.66	66.05
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	25.85	62.35
AT2G22670.4	Thale cress	nucleus	50.0	60.65
VIT_05s0020g04680.t01	Wine grape	nucleus	22.93	55.95
VIT_09s0002g04080.t01	Wine grape	nucleus	43.17	55.31
VIT_11s0016g03540.t01	Wine grape	nucleus	42.68	54.69
VIT_14s0030g02310.t01	Wine grape	nucleus	25.37	52.26
VIT_07s0141g00270.t01	Wine grape	nucleus	23.66	52.15
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	30.0	51.68
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	30.24	51.03
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	24.63	46.76
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	20.98	44.79
VIT_09s0002g05160.t01	Wine grape	nucleus	26.1	36.39

Protein Annotations

EntrezGene:100232909	wikigene:100232909	Gene3D:3.10.20.90	MapMan:35.1	ProteinID:AAL92850	ProteinID:AAL92850.1
ProteinID:ADR80320	ProteinID:ADR80320.1	ProteinID:AEV89794	ProteinID:AEV89794.1	EMBL:AM477181	InterPro:AUX/IAA_dom
InterPro:AUX_IAA	EMBL:AY082522	ProteinID:CAN77436	ProteinID:CAN77436.1	ProteinID:CCB45692	ProteinID:CCB45692.1
UniProt:F6GZL3	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	EMBL:HQ337788	InterPro:IPR000270	EMBL:JN903530	EntrezGene:LOC100232909
wikigene:LOC100232909	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF18
SUPFAM:SSF54277	TIGR:TC51731	UniParc:UPI000210952C	ArrayExpress:VIT_18s0001g08090	EnsemblPlantsGene:VIT_18s0001g08090	EnsemblPlants:VIT_18s0001g08090.t01
unigene:Vvi.137	SEG:seg	:	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6GZL3]

Coordinates

chr18:+:6527840..6532323

Molecular Weight (calculated)

44277.9 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.398

Length

410 amino acids

Sequence
(BLAST)

001: MENLGLLGAQ TGYKGIGVLF NVMSPPLLGV GEEEGQSNVT ILASSASMES VCQISSGLKE RNYMGLSECS SVDSSAISTD SDGNKSSLNL KATELRLGLP
101: GSLSPGREPE LCLLSSTKLD EKPLFPLHPS KDLTYTSSQK TVVSGNKRGF ADAMNGFSEG KFLANSEVNV MLSPRPSPNK ENLGSQPAKM KEMASPKIVQ
201: ERPRATNETP PNHTGTGNNN SSAPATKAQV VGWPPIRSFR KNTLATTSKN TEVDGKAGPG ALFVKVSMDG APYLRKVDLR NYSAYQELSS ALEKMFSCFT
301: IGQYGSHGAP GREMLSESKL KDLLHGSEYV LTYEDKDGDW MLVGDVPWQM FIETCKRLRI MKSCDAIGLG LWRNARTGTS LPLHMVVAIH PAGLGEGGNA
401: KARFWWKCRN

Best Arabidopsis Sequence Match ( AT5G65670.1 )
(BLAST)

001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAAAPRA MEKSKMRA

Arabidopsis Description

IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.