Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67912 | nucleus |
| CDX68620 | nucleus |
| CDX76680 | nucleus |
| CDX80025 | nucleus |
| CDX80168 | nucleus |
| CDX83741 | nucleus |
| CDX83778 | nucleus |
| CDX89163 | nucleus |
| CDX92437 | nucleus |
| CDX95705 | nucleus |
| CDX96672 | nucleus |
| CDY01393 | nucleus |
| CDY11468 | nucleus |
| CDY16560 | nucleus |
| CDY26690 | nucleus |
| CDY29392 | nucleus |
| CDY30172 | nucleus |
| CDY31545 | nucleus |
| CDY39348 | nucleus |
| CDY41030 | nucleus |
| CDY43553 | nucleus |
| CDY45069 | nucleus |
| CDY46728 | nucleus |
| CDY53998 | nucleus |
| CDY61164 | nucleus |
| CDY62586 | nucleus |
| CDY68868 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030219.1-P | Field mustard | nucleus | 98.87 | 98.87 |
| CDX89499 | Canola | nucleus | 95.11 | 93.36 |
| AT2G22670.4 | Thale cress | nucleus | 88.72 | 69.82 |
| KRH75635 | Soybean | nucleus | 70.3 | 59.18 |
| CDY40881 | Canola | cytosol | 38.35 | 55.74 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 37.22 | 54.7 |
| KRH39524 | Soybean | nucleus | 71.43 | 53.67 |
| CDY68170 | Canola | nucleus, plastid | 62.03 | 53.05 |
| KRH74432 | Soybean | nucleus | 71.43 | 52.92 |
| CDY10694 | Canola | mitochondrion | 34.59 | 52.87 |
| KRH45470 | Soybean | nucleus | 68.8 | 52.29 |
| CDX94876 | Canola | nucleus | 33.08 | 51.46 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 63.53 | 51.37 |
| Solyc04g076850.2.1 | Tomato | nucleus | 67.29 | 51.29 |
| CDY18679 | Canola | plastid | 60.15 | 51.28 |
| CDY10692 | Canola | nucleus | 33.08 | 51.16 |
| PGSC0003DMT400016356 | Potato | nucleus | 66.92 | 51.0 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 63.53 | 50.9 |
| CDY35493 | Canola | nucleus | 32.71 | 50.88 |
| CDY40837 | Canola | nucleus | 32.71 | 50.88 |
| CDX92972 | Canola | nucleus | 32.71 | 50.88 |
| CDY37837 | Canola | mitochondrion | 56.39 | 50.68 |
| CDY10346 | Canola | nucleus | 32.71 | 50.58 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 51.5 | 49.64 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 33.46 | 49.44 |
| CDY10069 | Canola | nucleus | 33.83 | 48.91 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 34.96 | 48.69 |
| KRH72523 | Soybean | nucleus | 66.92 | 48.63 |
| KRH62157 | Soybean | nucleus | 65.79 | 48.61 |
| CDY36883 | Canola | nucleus | 31.2 | 48.26 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 34.59 | 48.17 |
| KRH16912 | Soybean | nucleus | 66.17 | 47.96 |
| CDY53735 | Canola | nucleus | 30.83 | 47.67 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 41.35 | 47.62 |
| CDY06836 | Canola | nucleus | 45.11 | 47.62 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 33.08 | 47.31 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 42.48 | 47.08 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 42.48 | 47.08 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 41.73 | 46.84 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 40.98 | 46.78 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 32.71 | 46.77 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 41.35 | 46.61 |
| CDY53305 | Canola | cytosol | 27.44 | 46.5 |
| CDY18214 | Canola | nucleus | 38.72 | 45.98 |
| CDX89832 | Canola | nucleus | 38.72 | 45.98 |
| CDY47148 | Canola | nucleus | 40.23 | 45.92 |
| KRH52867 | Soybean | nucleus | 62.41 | 45.6 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 40.6 | 45.57 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 39.1 | 45.41 |
| CDY32537 | Canola | nucleus | 38.72 | 45.18 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 38.72 | 45.18 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 69.17 | 44.88 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 40.6 | 43.9 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 31.95 | 43.81 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 31.58 | 43.3 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 31.58 | 42.64 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 31.58 | 42.64 |
| CDY68807 | Canola | nucleus | 30.45 | 41.33 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 26.32 | 40.46 |
| CDY26042 | Canola | nucleus | 29.32 | 39.8 |
| CDY50750 | Canola | nucleus, plastid | 42.86 | 39.18 |
| CDY53800 | Canola | nucleus | 27.07 | 38.3 |
| CDY63072 | Canola | nucleus | 39.85 | 26.63 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078GKF0 | UniProt:A0A078GKF0 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY25617 | ProteinID:CDY25617 | ProteinID:CDY25617.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00032897001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF24 | SUPFAM:SSF54277 | UniParc:UPI0004EE98D0 |
Description
BnaA04g13090DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKF0]
Coordinates
chrLK032177:+:293467..295322
Molecular Weight (calculated)
29381.1 Da
IEP (calculated)
8.943
GRAVY (calculated)
-0.525
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYQLLSVDK EGLATSPGLK ERNYMGLSDC SSVDSSTIPN VDKKSSLNFK ATELRLGLPE SSQSPQRETD YRLLSPRTPD EKLLFPLLPC KDHASGNKRG
101: YLAKSGSNNA PAAKAQVVGW PPIRSYRKNT MASSTSKNTN EVGLGPLFVK VSMDGAPYLR KVDLRTYTCY QHLSSALEKM FSCFTLGQCG LHGAHGRERM
201: SEVKLKDLLH GSEFVLTYED KDGDWMLVGD VPWEIFTESC RKLKIMKGSD SIGLAPSAVE KSKNKD
101: YLAKSGSNNA PAAKAQVVGW PPIRSYRKNT MASSTSKNTN EVGLGPLFVK VSMDGAPYLR KVDLRTYTCY QHLSSALEKM FSCFTLGQCG LHGAHGRERM
201: SEVKLKDLLH GSEFVLTYED KDGDWMLVGD VPWEIFTESC RKLKIMKGSD SIGLAPSAVE KSKNKD
001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.