Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 93.55 | 93.55 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 93.55 | 93.55 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 81.18 | 83.89 |
| CDY10069 | Canola | nucleus | 80.11 | 80.98 |
| KRH34375 | Soybean | cytosol, nucleus | 48.92 | 74.59 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 74.73 | 72.77 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 73.12 | 71.2 |
| CDX94876 | Canola | nucleus | 58.6 | 63.74 |
| CDX92972 | Canola | nucleus | 58.06 | 63.16 |
| CDY35493 | Canola | nucleus | 58.06 | 63.16 |
| CDY10692 | Canola | nucleus | 58.06 | 62.79 |
| CDY40837 | Canola | nucleus | 57.53 | 62.57 |
| CDY10346 | Canola | nucleus | 57.53 | 62.21 |
| Solyc09g083280.2.1 | Tomato | nucleus | 64.52 | 61.22 |
| CDY36883 | Canola | nucleus | 56.45 | 61.05 |
| PGSC0003DMT400015655 | Potato | nucleus | 63.98 | 61.03 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 61.83 | 60.53 |
| Solyc06g053840.2.1 | Tomato | nucleus | 61.83 | 60.53 |
| CDY53735 | Canola | nucleus | 55.38 | 59.88 |
| KRG92430 | Soybean | nucleus | 61.29 | 58.76 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 42.47 | 58.09 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 51.08 | 57.93 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 38.71 | 57.6 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 51.61 | 57.14 |
| KRH69048 | Soybean | nucleus | 58.06 | 56.25 |
| Solyc04g054280.1.1 | Tomato | nucleus | 50.0 | 56.02 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 49.46 | 54.76 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 83.87 | 53.98 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 48.92 | 53.22 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 50.0 | 51.38 |
| GSMUA_Achr11P... | Banana | nucleus | 47.31 | 50.57 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 51.08 | 50.53 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 52.15 | 48.99 |
| Os12t0601400-01 | Rice | nucleus | 50.54 | 47.72 |
| CDY53305 | Canola | cytosol | 39.25 | 46.5 |
| CDY10694 | Canola | mitochondrion | 42.47 | 45.4 |
| Zm00001d013071_P001 | Maize | nucleus | 44.09 | 45.3 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 51.61 | 44.86 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 51.61 | 44.86 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 51.61 | 44.86 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 48.39 | 44.34 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 47.31 | 44.22 |
| Zm00001d018973_P001 | Maize | nucleus | 47.31 | 43.56 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 41.94 | 43.09 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 43.01 | 43.01 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 40.86 | 42.94 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 44.09 | 42.27 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 44.09 | 42.27 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 48.39 | 41.86 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 44.09 | 41.62 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 44.09 | 41.62 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 47.31 | 41.51 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 46.77 | 41.04 |
| Zm00001d041418_P001 | Maize | nucleus | 50.54 | 40.87 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 50.54 | 40.69 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 51.61 | 40.68 |
| CDX89832 | Canola | nucleus | 48.92 | 40.62 |
| CDY18214 | Canola | nucleus | 48.92 | 40.62 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 48.92 | 40.27 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 37.1 | 39.88 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 48.92 | 39.74 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 50.54 | 39.66 |
| CDY47148 | Canola | nucleus | 49.46 | 39.48 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 48.39 | 39.47 |
| CDY32537 | Canola | nucleus | 48.39 | 39.47 |
| Os03t0633800-01 | Rice | nucleus | 47.85 | 39.38 |
| CDY40881 | Canola | cytosol | 38.71 | 39.34 |
| Zm00001d013707_P001 | Maize | nucleus | 47.31 | 39.29 |
| Zm00001d030993_P001 | Maize | nucleus | 41.94 | 39.2 |
| Os03t0797800-01 | Rice | nucleus | 41.4 | 39.09 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 51.61 | 39.02 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 49.46 | 38.82 |
| CDY26042 | Canola | nucleus | 40.86 | 38.78 |
| CDY68807 | Canola | nucleus | 40.86 | 38.78 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 48.39 | 38.63 |
| EES16315 | Sorghum | cytosol | 50.54 | 38.52 |
| Os07t0182400-01 | Rice | plastid | 45.16 | 38.36 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 49.46 | 38.33 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 49.46 | 38.33 |
| Zm00001d033319_P001 | Maize | nucleus | 46.24 | 38.05 |
| CDY06836 | Canola | nucleus | 48.92 | 36.11 |
| CDY53800 | Canola | nucleus | 36.02 | 35.64 |
| HORVU5Hr1G106350.2 | Barley | plastid | 41.94 | 34.67 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 33.33 | 34.25 |
| CDY25617 | Canola | nucleus | 46.77 | 32.71 |
| CDY50750 | Canola | nucleus, plastid | 51.08 | 32.65 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 44.62 | 32.42 |
| CDX89499 | Canola | nucleus | 46.24 | 31.73 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 50.0 | 29.62 |
| CDY37837 | Canola | mitochondrion | 46.77 | 29.39 |
| CDY68170 | Canola | nucleus, plastid | 48.39 | 28.94 |
| CDY18679 | Canola | plastid | 48.39 | 28.85 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 41.4 | 27.9 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 47.31 | 26.75 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 47.31 | 26.51 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 42.47 | 24.69 |
| CDY63072 | Canola | nucleus | 47.85 | 22.36 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078G0S2 | UniProt:A0A078G0S2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY18213 | ProteinID:CDY18213 | ProteinID:CDY18213.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002742001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF11 | SUPFAM:SSF54277 | UniParc:UPI0004EE431F |
Description
BnaC05g02360DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0S2]
Coordinates
chrLK032083:-:356533..357498
Molecular Weight (calculated)
21019.2 Da
IEP (calculated)
7.652
GRAVY (calculated)
-0.534
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEFVNLKAT ELRLGLPGTD NACEERERVS CNKRTLQGVT ENETESSMIK TGTCPPRKAQ IVGWPPVRSS RKNIIQTKKN ESDSEGGRGV YVKVSMDGAP
101: YLRKIDLSCY KGYKELLKAL EIMFNFSVGE YFEREGYKGS DFVPTYEDKD GDWMLIGDVP WEMFVCTCKR LRIMRGSEAK GVGCVV
101: YLRKIDLSCY KGYKELLKAL EIMFNFSVGE YFEREGYKGS DFVPTYEDKD GDWMLIGDVP WEMFVCTCKR LRIMRGSEAK GVGCVV
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.