Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033319_P001 | Maize | nucleus | 80.53 | 80.53 |
| Zm00001d013707_P001 | Maize | nucleus | 76.99 | 77.68 |
| Os03t0633800-01 | Rice | nucleus | 65.04 | 65.04 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 60.62 | 63.72 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 57.96 | 61.79 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 57.52 | 61.32 |
| KRH34375 | Soybean | cytosol, nucleus | 31.42 | 58.2 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 31.42 | 56.8 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 48.23 | 54.77 |
| EES16315 | Sorghum | cytosol | 57.96 | 53.69 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 45.13 | 53.68 |
| Solyc06g053840.2.1 | Tomato | nucleus | 45.13 | 53.68 |
| PGSC0003DMT400051896 | Potato | plastid | 36.28 | 53.59 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 40.27 | 53.22 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 36.28 | 52.56 |
| GSMUA_Achr11P... | Banana | nucleus | 40.27 | 52.3 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 46.02 | 52.26 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 42.92 | 52.15 |
| Solyc04g054280.1.1 | Tomato | nucleus | 38.05 | 51.81 |
| AT4G14560.1 | Thale cress | nucleus | 38.5 | 51.79 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 42.48 | 51.61 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 43.36 | 51.31 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 40.71 | 51.11 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.92 | 50.79 |
| CDY36883 | Canola | nucleus | 38.5 | 50.58 |
| Bra032521.1-P | Field mustard | nucleus | 40.27 | 50.56 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 41.59 | 50.54 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 41.59 | 50.54 |
| Solyc09g083280.2.1 | Tomato | nucleus | 43.81 | 50.51 |
| Bra027504.1-P | Field mustard | nucleus | 42.48 | 50.26 |
| PGSC0003DMT400015655 | Potato | nucleus | 43.36 | 50.26 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 37.17 | 50.0 |
| CDY53735 | Canola | nucleus | 38.05 | 50.0 |
| CDY10069 | Canola | nucleus | 40.71 | 50.0 |
| CDX92972 | Canola | nucleus | 37.61 | 49.71 |
| CDX94876 | Canola | nucleus | 37.61 | 49.71 |
| Bra001899.1-P | Field mustard | nucleus | 37.61 | 49.71 |
| KRH71338 | Soybean | nucleus | 44.25 | 49.51 |
| PGSC0003DMT400049677 | Potato | nucleus | 39.82 | 49.18 |
| CDY35493 | Canola | nucleus | 37.17 | 49.12 |
| Bra023771.1-P | Field mustard | nucleus | 37.17 | 49.12 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 40.27 | 48.92 |
| Bra033890.1-P | Field mustard | nucleus | 37.17 | 48.84 |
| CDY10692 | Canola | nucleus | 37.17 | 48.84 |
| Bra039732.1-P | Field mustard | nucleus | 36.73 | 48.54 |
| CDY40837 | Canola | nucleus | 36.73 | 48.54 |
| KRH69048 | Soybean | nucleus | 41.15 | 48.44 |
| CDY10346 | Canola | nucleus | 36.73 | 48.26 |
| Solyc09g065850.2.1 | Tomato | nucleus | 39.38 | 48.11 |
| KRG92430 | Soybean | nucleus | 41.15 | 47.94 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 39.38 | 47.85 |
| KRH32098 | Soybean | nucleus | 35.84 | 46.55 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 33.63 | 46.34 |
| Solyc06g008580.2.1 | Tomato | nucleus | 37.61 | 44.74 |
| PGSC0003DMT400013662 | Potato | cytosol | 37.61 | 44.74 |
| KRH67288 | Soybean | nucleus | 39.82 | 43.69 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 60.62 | 43.63 |
| KRG95613 | Soybean | nucleus | 39.38 | 43.63 |
| KXG20284 | Sorghum | plastid | 32.74 | 39.78 |
| EER90896 | Sorghum | nucleus | 40.71 | 39.15 |
| KXG31707 | Sorghum | nucleus | 36.28 | 37.27 |
| EER89802 | Sorghum | cytosol | 40.27 | 36.55 |
| EES19135 | Sorghum | nucleus, plastid | 32.3 | 36.14 |
| OQU77659 | Sorghum | nucleus | 39.38 | 35.74 |
| EES17334 | Sorghum | cytosol | 43.36 | 34.88 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 42.04 | 32.87 |
| AT3G23030.2 | Thale cress | vacuole | 37.17 | 32.18 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 37.17 | 31.82 |
| KXG33104 | Sorghum | nucleus, plastid | 38.94 | 31.77 |
| KXG22521 | Sorghum | nucleus | 38.05 | 30.82 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:8062245 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:C5WS52 |
| EnsemblPlants:EER93778 | ProteinID:EER93778 | ProteinID:EER93778.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF25 | EnsemblPlantsGene:SORBI_3001G161500 | SUPFAM:SSF54277 | UniParc:UPI0001A82B89 |
| RefSeq:XP_002466780.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:13278084..13279390
Molecular Weight (calculated)
23888.2 Da
IEP (calculated)
7.891
GRAVY (calculated)
-0.345
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: METTVVGDLM ATELRLGLPG TVDDSCSLQS QVKATTPRGK KRATTDAAVE DAAAAEEATN KRDDAEAAPP AAKAPVVGWP PVRSYRKSCF QQAISSKQQV
101: SKQAAKDEAA AASPSCTAPS VAAANTTASV GGGSFVKVSM DGAPYLRKVD LRMYKGYREL REALEAMFVS SNSGSANLSE FAVTYEDKDG DLMLVGDVPF
201: EMFTSTCKKL RIMKRSEATG LGSARQ
101: SKQAAKDEAA AASPSCTAPS VAAANTTASV GGGSFVKVSM DGAPYLRKVD LRMYKGYREL REALEAMFVS SNSGSANLSE FAVTYEDKDG DLMLVGDVPF
201: EMFTSTCKKL RIMKRSEATG LGSARQ
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.