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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88840
EER89802
EER90734
EER90896
EER93778
EER94066
EER98076
EES00605
EES02172
EES05458
EES06968
EES10850
EES11567
EES13038
EES16315
EES17013
EES17334
EES17832
KXG19391
KXG19536
KXG22376
KXG22521
KXG26729
KXG31308
KXG33104
KXG33336
KXG34038
KXG36152
OQU77659
OQU83539
OQU84670
OQU86163
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 EES13038 AT1G19850.1 22096563
AT1G34310.1 EES02172 AT1G34310.1 22096563
AT1G34310.1 EES06968 AT1G59750.1 22096563
AT1G34310.1 EES10850 AT1G59750.1 22096563
AT1G34310.1 EES00605 AT3G17600.1 21734647
AT1G34310.1 EES02172 AT4G23980.1 22096563
AT1G34310.1 EES17013 AT5G62000.1 21734647
AT1G34310.1 KXG34038 AT5G62000.1 21734647
AT1G34310.1 OQU83539 AT5G62000.1 21734647
AT1G34390.1 EES02172 AT1G34310.1 21734647
AT1G34390.1 EES00605 AT2G46990.1 21734647
AT1G34390.1 EER90896 AT3G04730.1 21734647
AT1G34390.1 EES17334 AT3G04730.1 21734647
AT1G34390.1 OQU91311 AT3G04730.1 21734647
AT1G34390.1 EER90896 AT3G23050.1 21734647
AT1G34390.1 EES17334 AT3G23050.1 21734647
AT1G34390.1 OQU91311 AT3G23050.1 21734647
AT1G34390.1 EES17832 AT5G25890.1 21734647
AT1G34390.1 KXG22376 AT5G25890.1 21734647
AT1G34390.1 KXG33336 AT5G25890.1 21734647
AT1G34390.1 OQU84670 AT5G25890.1 21734647
AT1G34390.1 OQU86163 AT5G25890.1 21734647
AT1G35240.1 EER90896 AT1G04250.1 21734647
AT1G35240.1 EES17334 AT1G04250.1 21734647
AT1G35240.1 OQU91311 AT1G04250.1 21734647
AT1G35240.1 KXG19536 AT5G20730.1 21734647
AT3G61830.1 EER90896 AT1G04250.1 21734647
AT3G61830.1 EES17334 AT1G04250.1 21734647
AT3G61830.1 OQU91311 AT1G04250.1 21734647
AT3G61830.1 EES02172 AT1G34310.1 22096563
AT3G61830.1 EES17832 AT1G51950.1 22096563
AT3G61830.1 KXG22376 AT1G51950.1 22096563
AT3G61830.1 KXG33336 AT1G51950.1 22096563
AT3G61830.1 OQU84670 AT1G51950.1 22096563
AT3G61830.1 OQU86163 AT1G51950.1 22096563
AT3G61830.1 EES02172 AT3G61830.1 22096563
AT3G61830.1 EES11567 AT5G57420.1 21734647
AT4G23980.1 EES13038 AT1G19850.1 22096563
AT4G23980.1 EES02172 AT1G35240.1 21734647
AT4G23980.1 EES06968 AT1G59750.1 22096563
AT4G23980.1 EES10850 AT1G59750.1 22096563
AT4G23980.1 EER88840 AT2G28350.1 22096563
AT4G23980.1 EER94066 AT2G28350.1 22096563
AT4G23980.1 EES05458 AT2G28350.1 22096563
AT4G23980.1 KXG26729 AT2G28350.1 22096563
AT4G23980.1 KXG36152 AT2G28350.1 22096563
AT4G23980.1 EES17832 AT3G16500.1 21734647
AT4G23980.1 KXG22376 AT3G16500.1 21734647
AT4G23980.1 KXG33336 AT3G16500.1 21734647
AT4G23980.1 OQU84670 AT3G16500.1 21734647
AT4G23980.1 OQU86163 AT3G16500.1 21734647
AT4G23980.1 EES02172 AT3G61830.1 22096563
AT4G23980.1 EES00605 AT3G62100.1 21734647
AT4G23980.1 EES02172 AT4G23980.1 22096563
AT4G23980.1 EER89802 AT4G29080.1 21734647
AT4G23980.1 KXG22521 AT4G29080.1 21734647
AT4G23980.1 KXG33104 AT4G29080.1 21734647
AT4G23980.1 OQU77659 AT4G29080.1 21734647
AT4G23980.1 KXG19391 AT4G32280.1 21734647
AT4G23980.1 KXG31308 AT4G32280.1 21734647
AT4G23980.1 EES17832 AT5G25890.1 21734647
AT4G23980.1 KXG22376 AT5G25890.1 21734647
AT4G23980.1 KXG33336 AT5G25890.1 21734647
AT4G23980.1 OQU84670 AT5G25890.1 21734647
AT4G23980.1 OQU86163 AT5G25890.1 21734647
AT4G23980.1 EES17832 AT5G25890.1 22096563
AT4G23980.1 KXG22376 AT5G25890.1 22096563
AT4G23980.1 KXG33336 AT5G25890.1 22096563
AT4G23980.1 OQU84670 AT5G25890.1 22096563
AT4G23980.1 OQU86163 AT5G25890.1 22096563
AT4G23980.1 EER90734 AT5G43700.1 21734647
AT4G23980.1 EER93778 AT5G43700.1 21734647
AT4G23980.1 EER98076 AT5G43700.1 21734647
AT4G23980.1 EES16315 AT5G43700.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039267_P005 Maize nucleus 86.92 86.42
Os01t0236300-01 Rice nucleus 77.76 76.54
TraesCS3A01G159200.1 Wheat nucleus 70.78 64.16
TraesCS3D01G166700.1 Wheat nucleus 70.64 64.12
TraesCS3B01G190100.1 Wheat nucleus 70.64 64.12
HORVU3Hr1G032230.6 Barley nucleus, plastid 70.93 61.0
Bra014419.1-P Field mustard nucleus 40.26 49.91
CDX80025 Canola nucleus 41.13 48.46
Bra004530.1-P Field mustard nucleus 41.13 48.46
CDY47607 Canola nucleus 41.86 47.68
VIT_02s0025g01740.t01 Wine grape nucleus 47.09 47.51
Bra013748.1-P Field mustard nucleus 41.13 47.01
CDX95705 Canola nucleus 37.06 46.79
AT2G46530.3 Thale cress endoplasmic reticulum, vacuole 42.15 46.62
CDY03502 Canola nucleus 40.41 46.33
KRH00001 Soybean nucleus 44.62 46.23
AT3G61830.1 Thale cress nucleus 40.41 46.18
KRH49135 Soybean nucleus 44.33 45.93
GSMUA_Achr10P... Banana nucleus 44.48 45.88
GSMUA_Achr2P19760_001 Banana nucleus 44.04 45.36
VIT_15s0046g00290.t01 Wine grape nucleus 46.22 45.3
CDY10978 Canola nucleus 40.84 44.96
CDY50434 Canola nucleus 40.55 44.64
Bra019255.1-P Field mustard nucleus 40.41 44.62
AT4G23980.1 Thale cress nucleus 41.28 44.51
KRH68924 Soybean nucleus 42.73 44.41
KRH65922 Soybean nucleus 44.48 44.28
KRH75716 Soybean nucleus 44.19 43.93
PGSC0003DMT400031965 Potato nucleus 41.28 43.36
PGSC0003DMT400000345 Potato nucleus 42.59 42.77
Solyc08g082630.2.1 Tomato nucleus 39.97 42.7
EES06968 Sorghum nucleus 41.57 42.56
EES10850 Sorghum nucleus 40.84 42.51
Solyc01g096070.2.1 Tomato nucleus 42.44 42.38
KRH06451 Soybean nucleus 43.46 41.76
Solyc08g008380.2.1 Tomato nucleus 40.99 41.29
KRH47893 Soybean nucleus 42.73 41.06
AT1G34390.1 Thale cress nucleus 33.43 38.46
AT1G34310.1 Thale cress nucleus 33.14 38.45
AT1G35540.1 Thale cress nucleus 33.58 38.18
AT1G35240.1 Thale cress nucleus 32.56 37.84
AT1G35520.1 Thale cress nucleus 32.41 37.61
Bra034234.1-P Field mustard nucleus 29.51 37.52
AT1G34410.1 Thale cress nucleus 32.99 37.46
CDY67714 Canola nucleus 28.78 37.29
CDY69758 Canola nucleus 22.53 37.26
CDY48583 Canola nucleus 29.51 37.11
CDY21993 Canola nucleus 29.36 37.06
CDY53570 Canola nucleus 26.6 36.53
CDX94748 Canola endoplasmic reticulum, vacuole 19.62 36.49
AT1G34170.3 Thale cress nucleus 28.49 35.9
Bra027944.1-P Field mustard nucleus 27.91 34.97
CDY41720 Canola nucleus 27.91 34.91
CDY49005 Canola nucleus 27.91 34.47
CDX94777 Canola nucleus 27.76 34.29
CDY36940 Canola nucleus 26.89 33.39
CDY54111 Canola nucleus 27.47 33.33
KXG34038 Sorghum nucleus 39.1 33.21
Bra018124.1-P Field mustard nucleus 26.74 33.15
CDY24168 Canola nucleus 26.74 32.68
Bra017362.1-P Field mustard nucleus 25.44 32.41
CDY55738 Canola nucleus 25.0 31.85
OQU83539 Sorghum nucleus 37.35 31.53
EES17013 Sorghum nucleus 37.35 30.63
CDX94484 Canola nucleus 24.85 27.32
Bra007632.1-P Field mustard nucleus 39.97 26.07
KXG27404 Sorghum nucleus 30.38 25.52
CDX94528 Canola nucleus 23.4 24.07
EES17392 Sorghum nucleus 31.1 23.91
EES04575 Sorghum nucleus 31.4 23.71
EER90218 Sorghum nucleus 31.4 23.5
EES13038 Sorghum nucleus 30.23 21.99
KXG19536 Sorghum nucleus 32.41 21.18
CDY24162 Canola nucleus 19.48 20.62
EES15359 Sorghum nucleus 30.96 19.45
EER90336 Sorghum nucleus 31.83 18.9
OQU84350 Sorghum nucleus 28.49 18.32
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90EntrezGene:8078083InterPro:Auxin_resp
InterPro:B3_DNA-bdUniProt:C5XJJ7InterPro:DNA-bd_pseudobarrel_sfEnsemblPlants:EES02172ProteinID:EES02172ProteinID:EES02172.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009987InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300
InterPro:PB1_domPFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384
PANTHER:PTHR31384:SF17SMART:SM01019EnsemblPlantsGene:SORBI_3003G003800SUPFAM:SSF101936unigene:Sbi.5312UniParc:UPI0001A84D80
RefSeq:XP_002457052.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr3:-:386717..391211
Molecular Weight (calculated)
76899.2 Da
IEP (calculated)
6.365
GRAVY (calculated)
-0.456
Length
688 amino acids
Sequence
(BLAST)
001: MAQGRDPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LADQIKMFQV PNKILCKVVN VELKAETETD EMYAQITLQP EPDQMDLPTL
101: PDPPLPETSR PVVHSFCKIL TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL LTTGWSTFVT SKKLIAGDAF
201: VYLRSETGEQ RVGVRRLVQK QSTMPASVIS SQSMHLGVLA SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLESSKIGF NVGMRFKMSF EGEDVPVKKF
301: SGTVVDKGDL SPHWQGSDWK TLKVKWDEAT NFNGPERVSS WEIEPFDASA PAINIPVQPS MKNKRPRETA ESLDIHALEP AQEFWLSGRP EQHKTSISSN
401: EPNCISVHQV AWTSERPGYS AMSSSICQNS AVIGSWFKDF NSSSKGASPS LPEISQKLFQ VTSNDARVPP WPGLSAYQAE ELSSKLSCNT ALCSYQTEEV
501: APKFSIAVEE KKEPGMFRLF GVNLVNHTRS SGIADKMTVG VGETSMRGAG SFEDSGQLSA LSRVTKDHTH LVNESPREIQ SHQSCSGRNR IKVQMHGHAV
601: GKAVDLGNLD GYVQLMGELE EMFEIKDLGS KEEWKVTFTN DENDTMEVGA VLWQEFCQMV RKIVIHPIGH GSHMEAWPCP GQDGKRDF
Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)
001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN
Arabidopsis Description
ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.