Factsheet for Solyc01g096070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc07g019450.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g083290.2.1
Solyc11g069190.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT3G61830.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT3G61830.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT3G61830.1	Solyc03g121060.2.1	AT1G51950.1	22096563
AT3G61830.1	Solyc03g120380.2.1	AT1G52830.1	22096563
AT3G61830.1	Solyc03g120380.2.1	AT3G15540.1	22096563
AT3G61830.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT3G61830.1	Solyc07g019450.2.1	AT5G57420.1	21734647
AT3G61830.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000345	Potato	nucleus	94.63	95.18
VIT_15s0046g00290.t01	Wine grape	nucleus	68.65	67.38
Bra014419.1-P	Field mustard	nucleus	49.78	61.8
Bra004530.1-P	Field mustard	nucleus	51.81	61.13
CDX80025	Canola	nucleus	51.52	60.79
CDX95705	Canola	nucleus	48.04	60.73
KRH68924	Soybean	nucleus	57.18	59.52
AT3G61830.1	Thale cress	nucleus	51.09	58.47
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	52.39	58.04
KRH06451	Soybean	nucleus	59.51	57.26
KRH47893	Soybean	nucleus	59.51	57.26
Solyc08g008380.2.1	Tomato	nucleus	56.6	57.1
GSMUA_Achr10P...	Banana	nucleus	52.98	54.72
Solyc08g082630.2.1	Tomato	nucleus	50.94	54.5
GSMUA_Achr2P19760_001	Banana	nucleus	52.69	54.34
GSMUA_AchrUn_...	Banana	nucleus	49.78	54.02
GSMUA_Achr7P24330_001	Banana	nucleus	51.67	53.45
Solyc01g103050.2.1	Tomato	nucleus	48.91	51.53
Solyc12g006350.1.1	Tomato	nucleus	12.48	46.24
Os01t0236300-01	Rice	nucleus	44.27	43.63
EES02172	Sorghum	nucleus	42.38	42.44
Solyc03g118290.2.1	Tomato	nucleus	49.2	40.07
Zm00001d039267_P005	Maize	nucleus	39.91	39.74
Solyc12g042070.1.1	Tomato	nucleus	47.46	39.49
TraesCS3A01G159200.1	Wheat	nucleus	43.4	39.39
TraesCS3B01G190100.1	Wheat	nucleus	43.25	39.31
TraesCS3D01G166700.1	Wheat	nucleus	43.11	39.18
HORVU3Hr1G032230.6	Barley	nucleus, plastid	43.25	37.25
Solyc07g043620.2.1	Tomato	nucleus	27.14	35.62
Bra007632.1-P	Field mustard	nucleus	50.51	32.99
Solyc11g069190.1.1	Tomato	nucleus	34.83	29.59
Solyc03g031970.2.1	Tomato	nucleus	34.98	28.55
Solyc02g037530.2.1	Tomato	nucleus	34.25	28.03
Solyc04g081240.2.1	Tomato	nucleus	33.53	24.84
Solyc05g047460.2.1	Tomato	nucleus	34.25	21.51
Solyc07g016180.2.1	Tomato	nucleus	34.69	21.49
Solyc07g042260.2.1	Tomato	nucleus	34.54	20.93

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:K4AZZ6	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc01g096070.2	EnsemblPlants:Solyc01g096070.2.1	UniParc:UPI00027676C3	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4AZZ6]

Coordinates

chr1:+:87180948..87185212

Molecular Weight (calculated)

76968.2 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.466

Length

689 amino acids

Sequence
(BLAST)

001: MNLGMGTEDL YRDLWKACAG PLVDVPREGE RVYYFPQGHI EQLEASTNQA VNQQIPQFNL ASKILCHVFH VQLLAETETD EVYAQITLHP EAEQEEPSKP
101: DPCPPDLPKR TVHSFCKILT ASDTSTHGGF SVLRKHANEC LPQLDMTQAT PTQDLVAKDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV
201: FLRDDSGELR VGVRRLARQQ SPIPQSVISS QSMHLGVLAT ASHAITTQTR FVVYYKPRTS QFIVGLNKYL EAVSHGFSVG MRFRMRFEGE DSPERRFTGT
301: IVGTGDISSQ WSESKWRSLK IQWDEPASMV RPDRVSPWEI EPFVASTCVD VAQPGIKSKR PRPLDLPRSE IAVASAASPF WCPGSGLTLE VSHLGGITEV
401: QSRDNQLFWS SKQSSSLSNG MSNTSCRTHL SGAWQHNMLA NGSLNLLRDS IEDNKQLITR SALLDYGSPM SSRVSSGLLH DQVNRGSKHV ISSACRLFGI
501: DLRNNSNNTP SKAKEMLGPN ITSNCADEAP VVHDESEVDK DQNVGHLNPS EEKKQFQLEA LPKDTQKQGP TSSRTRTKVQ MEGVCVGRAV DLTALSGYDD
601: LISELEKIFD IKGELCPRNK WEVVYTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSEEVKK MTPRCKLPIL SLEGEGTMPS VDSELKAEG

Best Arabidopsis Sequence Match ( AT4G23980.2 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL GITASNLWSS VLTQPHEFAQ SCITSQWSSP
401: QQCHRDANED AKKSDWLNNS YSVSNVAKDS TLNDQMVSPV EQKKPETTAN YRLFGIDLMS SSLAVPEEKT APMRPINISK PTMDSHSDPK SEISKVSEEK
501: KQEPAEGSPK EVQSKQSSST RSRTKVQMQG VPVGRAVDLN ALKGYNELID DIEKLFDIKG ELRSRNQWEI VFTDDEGDMM LVGDDPWPEF CNMVKRIFIW
601: SKEEVKKMTP GNQLRMLLRE VETTLTTTSK TDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.