Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G190100.1 | Wheat | nucleus | 98.95 | 99.08 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 98.95 | 99.08 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 94.2 | 89.38 |
| Os01t0236300-01 | Rice | nucleus | 67.98 | 73.82 |
| EES02172 | Sorghum | nucleus | 64.16 | 70.78 |
| Zm00001d039267_P005 | Maize | nucleus | 60.47 | 66.33 |
| Bra014419.1-P | Field mustard | nucleus | 37.42 | 51.17 |
| CDX80025 | Canola | nucleus | 38.6 | 50.17 |
| Bra004530.1-P | Field mustard | nucleus | 38.6 | 50.17 |
| CDX95705 | Canola | nucleus | 35.44 | 49.36 |
| AT2G46530.3 | Thale cress | endoplasmic reticulum, vacuole | 39.39 | 48.07 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 42.56 | 47.36 |
| AT3G61830.1 | Thale cress | nucleus | 37.55 | 47.34 |
| GSMUA_Achr10P... | Banana | nucleus | 41.5 | 47.23 |
| CDY47607 | Canola | nucleus | 37.42 | 47.02 |
| Bra013748.1-P | Field mustard | nucleus | 37.02 | 46.68 |
| KRH00001 | Soybean | nucleus | 40.32 | 46.08 |
| VIT_15s0046g00290.t01 | Wine grape | nucleus | 42.42 | 45.87 |
| KRH49135 | Soybean | nucleus | 39.92 | 45.63 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 40.05 | 45.51 |
| CDY03502 | Canola | nucleus | 35.7 | 45.17 |
| AT4G23980.1 | Thale cress | nucleus | 37.81 | 44.98 |
| CDY50434 | Canola | nucleus | 37.02 | 44.96 |
| CDY10978 | Canola | nucleus | 37.02 | 44.96 |
| KRH75716 | Soybean | nucleus | 40.84 | 44.8 |
| KRH65922 | Soybean | nucleus | 40.71 | 44.72 |
| KRH68924 | Soybean | nucleus | 39.0 | 44.71 |
| Bra019255.1-P | Field mustard | nucleus | 36.63 | 44.62 |
| PGSC0003DMT400031965 | Potato | nucleus | 38.21 | 44.27 |
| Solyc08g082630.2.1 | Tomato | nucleus | 37.55 | 44.25 |
| PGSC0003DMT400000345 | Potato | nucleus | 39.53 | 43.8 |
| Solyc01g096070.2.1 | Tomato | nucleus | 39.39 | 43.4 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 36.76 | 42.66 |
| Solyc08g008380.2.1 | Tomato | nucleus | 37.68 | 41.87 |
| KRH06451 | Soybean | nucleus | 39.26 | 41.62 |
| KRH47893 | Soybean | nucleus | 39.0 | 41.34 |
| AT1G35240.1 | Thale cress | nucleus | 30.7 | 39.36 |
| AT1G34310.1 | Thale cress | nucleus | 30.57 | 39.12 |
| AT1G34410.1 | Thale cress | nucleus | 31.23 | 39.11 |
| AT1G35540.1 | Thale cress | nucleus | 31.09 | 39.01 |
| AT1G34390.1 | Thale cress | nucleus | 30.7 | 38.96 |
| Bra034234.1-P | Field mustard | nucleus | 27.27 | 38.26 |
| AT1G35520.1 | Thale cress | nucleus | 29.64 | 37.94 |
| CDY48583 | Canola | nucleus | 27.27 | 37.84 |
| CDY69758 | Canola | nucleus | 20.69 | 37.74 |
| CDY67714 | Canola | nucleus | 26.35 | 37.66 |
| CDY21993 | Canola | nucleus | 27.01 | 37.61 |
| CDY53570 | Canola | nucleus | 24.77 | 37.52 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 18.05 | 37.03 |
| AT1G34170.3 | Thale cress | nucleus | 26.22 | 36.45 |
| Bra027944.1-P | Field mustard | nucleus | 26.22 | 36.25 |
| CDY41720 | Canola | nucleus | 26.22 | 36.18 |
| CDY49005 | Canola | nucleus | 26.48 | 36.09 |
| CDX94777 | Canola | nucleus | 25.96 | 35.37 |
| CDY54111 | Canola | nucleus | 25.69 | 34.39 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 35.84 | 34.13 |
| CDY36940 | Canola | nucleus | 24.9 | 34.12 |
| CDY24168 | Canola | nucleus | 25.16 | 33.93 |
| Bra018124.1-P | Field mustard | nucleus | 24.77 | 33.87 |
| Bra017362.1-P | Field mustard | nucleus | 23.72 | 33.33 |
| CDY55738 | Canola | nucleus | 23.45 | 32.96 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 35.84 | 32.81 |
| CDX94484 | Canola | nucleus | 23.58 | 28.59 |
| Bra007632.1-P | Field mustard | nucleus | 37.68 | 27.11 |
| TraesCS2A01G547800.1 | Wheat | nucleus | 28.33 | 25.87 |
| CDX94528 | Canola | nucleus | 22.13 | 25.11 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 29.51 | 24.92 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 29.25 | 24.42 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 29.38 | 24.03 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 27.67 | 21.99 |
| CDY24162 | Canola | nucleus | 18.58 | 21.69 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 29.78 | 21.2 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 30.57 | 20.44 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 28.85 | 20.15 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 30.57 | 19.78 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF17 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS3A01G159200 | EnsemblPlants:TraesCS3A01G159200.1 | TIGR:cd10017 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:158467697..158471514
Molecular Weight (calculated)
83732.0 Da
IEP (calculated)
6.470
GRAVY (calculated)
-0.495
Length
759 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAQQQTLT QGEHHPVPRP DQLLLPPSSL SPRPHSSFPP WEDRTAEPVH HQPTATRVAM AQPGRGRDPE LFAELWRACA GPLVEVPQRG ERVFYFLQGH
101: LEQLQEPTDS ALLAEQIKMF QVPYKILCKV VNVELKAEAE TDEVYAQITL QPESDQDNLP LICDPILPET PRPVVHTFCK ILTPSDTSTH GGFSVLRRHA
201: NECLPPLDMA MPTPTQEIIS KDLHGSEWRF KHIYRGQPRR HLLTTGWSTF VTSKKLMAGD AFVYLRSETG EQRVGVRRLV QKQSTMPASV ISSQSMHLGV
301: LASASHALKT NSIFVVYYRP RLSQSQYIVS VNKYLQASKT GFTVGMRFRM NFEAEDVPVK KFFGTIVGDG DLSPQWSGSE WKSLKVQWDD SVAICNGPER
401: VSPWEIDSSD ASSPAISALL QSSAKNKRPR ETNENFDLPS QEPTQEFWLS GMTQQHERTY VGSSDPNRIS GYHQILWPSS EPAGYGAMSS SSVCQTPLGL
501: GDGWPKDFNP SSQGVSPTLS EITQKLNRVA SSEGRTPPPW ATALCGGYRA EEPTSKLSCN PTLPLPEQVA PYLPKVAEKA KEPGVVRLFG VNLMENTNNA
601: AAPTAGNASA GAGETSARVA GSVEGSGQLS AFSKVTKVAN ESPREIQSQQ SNVGRNRVKV QMHGNAVGRA VDLASLDGYE GLTSELEQMF EIKDIKQNFK
701: VAFTDNEGDT MKVGDDPWME FCRMVRKIVI YPIEDDKNMD PRQTSVLAAA PDPDPKANL
101: LEQLQEPTDS ALLAEQIKMF QVPYKILCKV VNVELKAEAE TDEVYAQITL QPESDQDNLP LICDPILPET PRPVVHTFCK ILTPSDTSTH GGFSVLRRHA
201: NECLPPLDMA MPTPTQEIIS KDLHGSEWRF KHIYRGQPRR HLLTTGWSTF VTSKKLMAGD AFVYLRSETG EQRVGVRRLV QKQSTMPASV ISSQSMHLGV
301: LASASHALKT NSIFVVYYRP RLSQSQYIVS VNKYLQASKT GFTVGMRFRM NFEAEDVPVK KFFGTIVGDG DLSPQWSGSE WKSLKVQWDD SVAICNGPER
401: VSPWEIDSSD ASSPAISALL QSSAKNKRPR ETNENFDLPS QEPTQEFWLS GMTQQHERTY VGSSDPNRIS GYHQILWPSS EPAGYGAMSS SSVCQTPLGL
501: GDGWPKDFNP SSQGVSPTLS EITQKLNRVA SSEGRTPPPW ATALCGGYRA EEPTSKLSCN PTLPLPEQVA PYLPKVAEKA KEPGVVRLFG VNLMENTNNA
601: AAPTAGNASA GAGETSARVA GSVEGSGQLS AFSKVTKVAN ESPREIQSQQ SNVGRNRVKV QMHGNAVGRA VDLASLDGYE GLTSELEQMF EIKDIKQNFK
701: VAFTDNEGDT MKVGDDPWME FCRMVRKIVI YPIEDDKNMD PRQTSVLAAA PDPDPKANL
001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
Arabidopsis Description
ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.