Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G127900.1 | Wheat | nucleus | 90.2 | 61.33 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 92.16 | 58.75 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 81.37 | 52.53 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 85.29 | 51.79 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 89.22 | 51.41 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 58.82 | 50.42 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 58.82 | 41.38 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 33.33 | 37.36 |
| Os06t0166500-01 | Rice | nucleus | 64.71 | 36.07 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 60.78 | 36.05 |
| Zm00001d000288_P001 | Maize | cytosol | 62.75 | 32.49 |
| KXG19391 | Sorghum | nucleus | 64.71 | 32.35 |
| Zm00001d045203_P001 | Maize | cytosol | 66.67 | 31.48 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 45.1 | 25.0 |
| KRH20139 | Soybean | nucleus | 47.06 | 23.3 |
| KRH03666 | Soybean | cytosol | 45.1 | 23.12 |
| PGSC0003DMT400079375 | Potato | cytosol | 45.1 | 22.77 |
| Solyc07g008020.2.1 | Tomato | cytosol | 43.14 | 22.45 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 45.1 | 20.26 |
| PGSC0003DMT400035770 | Potato | cytosol | 41.18 | 19.18 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 38.24 | 18.84 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 42.16 | 18.7 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 41.18 | 18.5 |
| Solyc08g021820.2.1 | Tomato | nucleus | 41.18 | 18.5 |
| KRH61758 | Soybean | nucleus | 40.2 | 18.14 |
| KRH52428 | Soybean | nucleus | 40.2 | 18.06 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 42.16 | 17.77 |
| TraesCS6D01G378300.1 | Wheat | cytosol, nucleus, plastid | 49.02 | 17.67 |
| CDX75231 | Canola | nucleus | 36.27 | 16.02 |
| Bra011332.1-P | Field mustard | nucleus | 36.27 | 16.02 |
| CDX68829 | Canola | nucleus | 35.29 | 15.79 |
| CDY13478 | Canola | nucleus | 37.25 | 15.64 |
| Bra023958.1-P | Field mustard | nucleus | 37.25 | 15.64 |
| CDX72351 | Canola | nucleus | 37.25 | 15.38 |
| AT4G32280.1 | Thale cress | cytosol | 37.25 | 15.14 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 42.16 | 14.58 |
| TraesCS7D01G318900.2 | Wheat | plastid | 46.08 | 14.46 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 43.14 | 13.13 |
| TraesCS4D01G105700.1 | Wheat | cytosol | 39.22 | 10.64 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS7D01G128200 | EnsemblPlants:TraesCS7D01G128200.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7D:-:80462049..80462561
Molecular Weight (calculated)
11729.2 Da
IEP (calculated)
10.688
GRAVY (calculated)
-0.545
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKRKRLVG WPPVKSAHRP RSNSHVKVKM EGVPIGRKVD LSRHASYHQL HHTLRLMFPS TSHHGDPYAV TYEDVDGDWV LVGDVPWEDF VRSAKRLKIL
101: LV
101: LV
001: MAYEKVNELN LKDTELCLGL PGRTEKIKEE QEVSCVKSNN KRLFEETRDE EESTPPTKTQ IVGWPPVRSS RKNNNSVSYV KVSMDGAPYL RKIDLKTYKN
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
Arabidopsis Description
IAA2Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.