Factsheet for GSMUA_Achr9P26910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P10240_001
GSMUA_Achr6P03870_001
GSMUA_Achr7P16390_001
GSMUA_Achr9P18170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32280.1	GSMUA_Achr3P10240_001	AT1G19220.1	21734647
AT4G32280.1	GSMUA_Achr9P18170_001	AT1G19220.1	21734647
AT4G32280.1	GSMUA_Achr3P10240_001	AT5G20730.1	21734647
AT4G32280.1	GSMUA_Achr9P18170_001	AT5G20730.1	21734647
AT4G32280.1	GSMUA_Achr10P...	AT5G57420.1	21734647
AT4G32280.1	GSMUA_Achr6P03870_001	AT5G57420.1	21734647
AT4G32280.1	GSMUA_Achr7P16390_001	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P26900_001	Banana	plastid	66.9	81.51
TraesCS7A01G129000.1	Wheat	nucleus	33.79	59.76
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	41.38	58.82
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	27.59	43.96
TraesCS7D01G127900.1	Wheat	nucleus	44.14	42.67
TraesCS7D01G128100.1	Wheat	nucleus	43.45	39.38
TraesCS7D01G127800.1	Wheat	cytosol	42.76	39.24
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	44.83	37.36
TraesCS7B01G029000.1	Wheat	cytosol	44.14	37.21
HORVU7Hr1G026970.2	Barley	cytosol	42.76	36.9
Os02t0805100-01	Rice	nucleus	45.52	36.26
TraesCS7B01G029100.1	Wheat	nucleus	42.76	35.03
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	41.38	34.88
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	41.38	34.29
Os06t0166500-01	Rice	nucleus	42.07	33.33
KXG19391	Sorghum	nucleus	46.21	32.84
KXG31308	Sorghum	cytosol	44.14	32.49
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	39.31	32.2
Zm00001d045203_P001	Maize	cytosol	47.59	31.94
Zm00001d000288_P001	Maize	cytosol	42.76	31.47
VIT_11s0016g05640.t01	Wine grape	cytosol	37.93	29.89
Zm00001d018414_P001	Maize	nucleus	42.07	29.61
GSMUA_Achr8P29850_001	Banana	nucleus	32.41	26.7
GSMUA_Achr9P16800_001	Banana	nucleus	30.34	25.29
PGSC0003DMT400079375	Potato	cytosol	33.79	24.26
Solyc07g008020.2.1	Tomato	cytosol	32.41	23.98
KRH20139	Soybean	nucleus	33.1	23.3
KRH03666	Soybean	cytosol	31.72	23.12
KRH61758	Soybean	nucleus	35.86	23.01
PGSC0003DMT400035770	Potato	cytosol	34.48	22.83
KRH52428	Soybean	nucleus	34.48	22.03
VIT_04s0008g05560.t01	Wine grape	extracellular	34.48	22.03
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	36.55	21.9
Solyc08g021820.2.1	Tomato	nucleus	33.79	21.59
GSMUA_Achr7P03120_001	Banana	nucleus	36.55	21.54
Bra011332.1-P	Field mustard	nucleus	31.03	19.48
CDX75231	Canola	nucleus	31.03	19.48
CDX68829	Canola	nucleus	30.34	19.3
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	31.03	19.15
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	29.66	18.86
GSMUA_Achr9P08370_001	Banana	nucleus	32.41	18.5
CDX72351	Canola	nucleus	31.03	18.22
GSMUA_Achr2P04230_001	Banana	nucleus	37.93	18.09
CDY13478	Canola	nucleus	29.66	17.7
Bra023958.1-P	Field mustard	nucleus	29.66	17.7
GSMUA_AchrUn_...	Banana	nucleus	37.93	17.57
GSMUA_Achr11P...	Banana	nucleus	35.86	17.33
AT4G32280.1	Thale cress	cytosol	29.66	17.13
GSMUA_Achr10P...	Banana	nucleus	35.86	16.77
GSMUA_Achr6P29100_001	Banana	nucleus	31.72	15.54
GSMUA_AchrUn_...	Banana	nucleus	29.66	13.96
GSMUA_Achr7P13680_001	Banana	nucleus	30.34	11.99

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G26910_001	EnsemblPlants:GSMUA_Achr9P26910_001
EnsemblPlants:GSMUA_Achr9T26910_001	InterPro:IPR000270	UniProt:M0U3U8	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF38	SUPFAM:SSF54277	UniParc:UPI00029608BE	SEG:seg	:

Description

Auxin-responsive protein IAA9 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26910_001]

Coordinates

chr9:-:31254382..31255579

Molecular Weight (calculated)

16506.4 Da

IEP (calculated)

4.856

GRAVY (calculated)

-0.636

Length

145 amino acids

Sequence
(BLAST)

001: MFYGATSPPL FVHKDGDDDD GDDDDSRFNH LQELNLGSRV LVGWPPVRVS RRKGEEGGKR RVNCVKVNME GVAIGRKVDL SLHDSYQALF LTLSQMFPKK
101: QHDGEESDAA YYKVTYEDED GDWMLVGDVP WEAFIQSVKR LKILN

Best Arabidopsis Sequence Match ( AT2G33310.1 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.