Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G112440.1 | |
| HORVU7Hr1G033820.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | HORVU7Hr1G033820.5 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | HORVU7Hr1G033820.5 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | HORVU2Hr1G112440.1 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 82.76 | 83.72 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 83.33 | 82.86 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 82.76 | 81.36 |
| Os02t0805100-01 | Rice | nucleus | 60.34 | 57.69 |
| KXG31308 | Sorghum | cytosol | 62.07 | 54.82 |
| Zm00001d018414_P001 | Maize | nucleus | 62.64 | 52.91 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 47.13 | 48.81 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 33.33 | 48.74 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 37.36 | 44.83 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 20.69 | 39.56 |
| PGSC0003DMT400079375 | Potato | cytosol | 32.76 | 28.22 |
| Solyc07g008020.2.1 | Tomato | cytosol | 31.03 | 27.55 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 35.63 | 27.31 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 28.16 | 26.63 |
| PGSC0003DMT400035770 | Potato | cytosol | 32.76 | 26.03 |
| KRH52428 | Soybean | nucleus | 33.91 | 25.99 |
| Solyc08g021820.2.1 | Tomato | nucleus | 33.33 | 25.55 |
| KRH20139 | Soybean | nucleus | 29.89 | 25.24 |
| KRH61758 | Soybean | nucleus | 32.76 | 25.22 |
| KRH03666 | Soybean | cytosol | 28.74 | 25.13 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 33.33 | 23.97 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 37.93 | 23.49 |
| AT4G32280.1 | Thale cress | cytosol | 32.76 | 22.71 |
| CDX68829 | Canola | nucleus | 29.31 | 22.37 |
| CDX75231 | Canola | nucleus | 29.31 | 22.08 |
| Bra011332.1-P | Field mustard | nucleus | 29.31 | 22.08 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 31.03 | 21.86 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 30.46 | 21.63 |
| CDX72351 | Canola | nucleus | 29.31 | 20.65 |
| CDY13478 | Canola | nucleus | 28.74 | 20.58 |
| Bra023958.1-P | Field mustard | nucleus | 28.74 | 20.58 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 22.99 | 19.32 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 31.61 | 17.08 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 29.31 | 14.45 |
| HORVU4Hr1G016160.1 | Barley | plastid | 27.59 | 13.37 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G088140 | EnsemblPlants:HORVU6Hr1G088140.2 |
| InterPro:IPR000270 | UniProt:M0WGS1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF88 | SUPFAM:SSF54277 | UniParc:UPI0002962992 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:M0WGS1]
Coordinates
chrchr6H:+:565752613..565754083
Molecular Weight (calculated)
17874.1 Da
IEP (calculated)
5.262
GRAVY (calculated)
-0.191
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP TNTGRLLLGG GKRGFGEAFG EDGEQQSAAV ATTLPLFDDG SSSSSSGSGD GGGVGGTNKK ALVGWPPVSS ARSRACGAGG GGGRHVKVRK
101: EGAAIGRKVD LSLHGSYADL LATLARMFPD PAGCLHAESE MVVTYEDADG DWMLVGDVPW EDFARSVKRL KILL
101: EGAAIGRKVD LSLHGSYADL LATLARMFPD PAGCLHAESE MVVTYEDADG DWMLVGDVPW EDFARSVKRL KILL
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.