Factsheet for HORVU6Hr1G091260.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	90.04	89.4
TraesCS6B01G432800.1	Wheat	nucleus	86.83	88.09
TraesCS6A01G392600.3	Wheat	cytosol, nucleus, plastid	87.9	86.67
Os02t0817600-02	Rice	nucleus	73.67	73.67
KXG31359	Sorghum	cytosol, nucleus, peroxisome	71.17	67.57
Zm00001d051911_P002	Maize	nucleus	69.75	66.67
GSMUA_Achr11P...	Banana	nucleus	40.93	38.33
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	23.49	37.93
HORVU7Hr1G026970.2	Barley	cytosol	21.71	36.31
HORVU1Hr1G028170.4	Barley	cytosol, nucleus, plastid	23.84	27.13
HORVU3Hr1G019750.4	Barley	cytosol, nucleus, plastid	22.06	25.31
HORVU3Hr1G070620.5	Barley	cytosol, mitochondrion, nucleus	27.05	21.53
HORVU7Hr1G077110.10	Barley	nucleus	22.78	19.88
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	12.81	17.39
HORVU4Hr1G016160.1	Barley	plastid	21.35	16.71

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A287V679	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G091260
EnsemblPlants:HORVU6Hr1G091260.3	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000B483536	SEG:seg	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287V679]

Coordinates

chrchr6H:-:575070292..575072784

Molecular Weight (calculated)

29816.1 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.493

Length

281 amino acids

Sequence
(BLAST)

001: MRGPTAAAAF GPGEPPPAAE EVVEENSGGE EELELGLCLG SKKLLQLPVA PSPCRILTAR DLHPAAALSP DSSVSSSSPA AAKPEDGPAP AASPGTLASG
101: HPQSSFGVVG WPPIRTFRMN SLFGQAKDNA SEAETKKAAA DDSGSQKDKE ETEKKGRVPG WVKVNMDGEV IGRKVDLNAH RSYKTLALAL EIMFTKPSAG
201: LCASNATKSL KLLDNSSEYQ MTYEDRDGDW MLVGDVPWEM FVGSVKRLRI MRTSDASGLG ATVSSQSQNR SLDTREDMRR G

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.