Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G112440.1 | |
| HORVU7Hr1G033820.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | HORVU7Hr1G033820.5 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | HORVU7Hr1G033820.5 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | HORVU2Hr1G112440.1 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 51.79 | 85.29 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 38.69 | 79.27 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 70.24 | 78.67 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 74.4 | 78.12 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 72.62 | 77.22 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 77.98 | 76.16 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 71.43 | 67.8 |
| Os06t0166500-01 | Rice | nucleus | 54.17 | 49.73 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 35.12 | 49.58 |
| Zm00001d000288_P001 | Maize | cytosol | 57.74 | 49.24 |
| KXG19391 | Sorghum | nucleus | 59.52 | 49.02 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 48.81 | 47.13 |
| Zm00001d045203_P001 | Maize | cytosol | 58.33 | 45.37 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 36.9 | 42.76 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 20.24 | 37.36 |
| KRH03666 | Soybean | cytosol | 33.33 | 28.14 |
| KRH20139 | Soybean | nucleus | 33.93 | 27.67 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 29.76 | 27.17 |
| PGSC0003DMT400035770 | Potato | cytosol | 33.33 | 25.57 |
| PGSC0003DMT400079375 | Potato | cytosol | 30.36 | 25.25 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 33.93 | 25.11 |
| Solyc08g021820.2.1 | Tomato | nucleus | 33.93 | 25.11 |
| Solyc07g008020.2.1 | Tomato | cytosol | 29.17 | 25.0 |
| KRH52428 | Soybean | nucleus | 31.55 | 23.35 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 32.74 | 22.73 |
| KRH61758 | Soybean | nucleus | 30.36 | 22.57 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 36.31 | 21.71 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 31.55 | 21.63 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 31.55 | 21.46 |
| AT4G32280.1 | Thale cress | cytosol | 28.57 | 19.12 |
| CDX68829 | Canola | nucleus | 25.6 | 18.86 |
| CDX72351 | Canola | nucleus | 27.38 | 18.62 |
| CDX75231 | Canola | nucleus | 25.6 | 18.61 |
| Bra011332.1-P | Field mustard | nucleus | 25.6 | 18.61 |
| CDY13478 | Canola | nucleus | 26.79 | 18.52 |
| Bra023958.1-P | Field mustard | nucleus | 26.79 | 18.52 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 20.24 | 16.43 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 30.95 | 16.15 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 31.55 | 15.01 |
| HORVU4Hr1G016160.1 | Barley | plastid | 29.17 | 13.65 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:AK364387 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:F2DKG9 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU7Hr1G026970 | EnsemblPlants:HORVU7Hr1G026970.2 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 | UniParc:UPI00020065F0 | SEG:seg | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F2DKG9]
Coordinates
chrchr7H:-:47404290..47405418
Molecular Weight (calculated)
18534.0 Da
IEP (calculated)
7.915
GRAVY (calculated)
-0.571
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP NHAGQPAGLC GKRDRSAPAV AFGVTKATLP LFLLRDDDGD DSGEDGTAGA RDWGTSNKRK RLVGWPPVKS AHRPRSHHNG HVKVKMEGVP
101: IGRMVDLSRH ASYHELHHTL RLMFPSSTVH HADPYAVTYE DGDGDWMLVG DVPWEEFSKS AKRLKILM
101: IGRMVDLSRH ASYHELHHTL RLMFPSSTVH HADPYAVTYE DGDGDWMLVG DVPWEEFSKS AKRLKILM
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.