Factsheet for PGSC0003DMT400079375

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008020.2.1	Tomato	cytosol	86.63	89.29
VIT_11s0016g05640.t01	Wine grape	cytosol	46.04	50.54
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	21.78	48.35
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	22.77	45.1
TraesCS7A01G129000.1	Wheat	nucleus	17.33	42.68
KRH20139	Soybean	nucleus	42.08	41.26
KRH03666	Soybean	cytosol	40.1	40.7
GSMUA_Achr9P26900_001	Banana	plastid	22.77	38.66
PGSC0003DMT400035770	Potato	cytosol	38.61	35.62
TraesCS7D01G127900.1	Wheat	nucleus	25.74	34.67
GSMUA_Achr9P26910_001	Banana	nucleus	24.26	33.79
TraesCS7D01G128100.1	Wheat	nucleus	26.24	33.12
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	28.22	32.76
Os06t0166500-01	Rice	nucleus	29.21	32.24
Os02t0805100-01	Rice	nucleus	28.71	31.87
TraesCS7B01G029000.1	Wheat	cytosol	26.24	30.81
TraesCS7D01G127800.1	Wheat	cytosol	23.76	30.38
HORVU7Hr1G026970.2	Barley	cytosol	25.25	30.36
TraesCS7B01G029100.1	Wheat	nucleus	26.24	29.94
KXG31308	Sorghum	cytosol	28.71	29.44
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	25.25	29.14
Zm00001d018414_P001	Maize	nucleus	29.7	29.13
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	24.75	29.07
KXG19391	Sorghum	nucleus	29.21	28.92
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	25.25	28.81
Zm00001d000288_P001	Maize	cytosol	27.23	27.92
Zm00001d045203_P001	Maize	cytosol	29.7	27.78
PGSC0003DMT400075427	Potato	nucleus	27.72	24.14
PGSC0003DMT400003784	Potato	nucleus	29.21	21.77
PGSC0003DMT400022133	Potato	nucleus	29.21	18.73
PGSC0003DMT400006709	Potato	nucleus	25.74	18.37

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M1D1Q6
InterPro:PB1_dom	PFAM:PF02309	EnsemblPlantsGene:PGSC0003DMG400030896	PGSC:PGSC0003DMG400030896	EnsemblPlants:PGSC0003DMT400079375	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF38	SUPFAM:SSF54277	UniParc:UPI0002968B98	SEG:seg	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030896]

Coordinates

chr7:+:4263685..4265199

Molecular Weight (calculated)

22721.7 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.670

Length

202 amino acids

Sequence
(BLAST)

001: MELQLGLALC GNSTKGYNLD DFNLNNNIKK GRSSEILDVQ DENDVKVLQT LPLLVWDNDN DDQNNEHKRK DGDEDGVVGW PPINSLRKKL CHQSRRGTMN
101: YVTVENGGVG GGTGGRGSIY KYVKVKMEGV GIARKIDLSL FHSYNTLTDT LISMFGKSKE NGDVYELTYQ DKEGDWLLAG DVPWRTFVGS VQRLKLIRDE
201: DY

Best Arabidopsis Sequence Match ( AT4G32280.1 )
(BLAST)

001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F

Arabidopsis Description

IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.