Factsheet for PGSC0003DMT400075427

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096980.1.1	Tomato	nucleus	96.98	96.57
PGSC0003DMT400003784	Potato	nucleus	65.95	56.46
CDY19477	Canola	nucleus	47.41	46.81
CDY53196	Canola	nucleus	45.69	46.7
Bra022934.1-P	Field mustard	nucleus	48.71	46.69
CDX84693	Canola	nucleus	48.71	46.69
CDY17158	Canola	nucleus	47.41	46.61
AT2G33310.2	Thale cress	nucleus	49.57	46.56
AT1G04550.2	Thale cress	cytosol	47.84	46.44
CDY59182	Canola	nucleus	44.83	46.22
CDX79522	Canola	nucleus	48.71	45.94
CDY18243	Canola	nucleus	45.26	45.45
CDX89814	Canola	nucleus	45.69	45.11
Bra015326.1-P	Field mustard	nucleus	45.69	45.11
Bra005508.1-P	Field mustard	nucleus	47.41	43.31
VIT_05s0049g01970.t01	Wine grape	nucleus	59.48	42.99
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	14.66	37.36
PGSC0003DMT400022133	Potato	nucleus	49.57	36.51
Bra032503.1-P	Field mustard	nucleus	45.69	34.19
PGSC0003DMT400079375	Potato	cytosol	24.14	27.72
PGSC0003DMT400035770	Potato	cytosol	23.28	24.66
PGSC0003DMT400006709	Potato	nucleus	29.31	24.03

Protein Annotations

EntrezGene:102591186	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
UniProt:M1CV61	InterPro:PB1_dom	PFAM:PF02309	EnsemblPlantsGene:PGSC0003DMG400029339	PGSC:PGSC0003DMG400029339	EnsemblPlants:PGSC0003DMT400075427
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0002955598	RefSeq:XP_015162035.1
SEG:seg	:	:	:	:	:

Description

ARF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029339]

Coordinates

chr12:+:58601416..58603740

Molecular Weight (calculated)

25924.6 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.633

Length

232 amino acids

Sequence
(BLAST)

001: MCSESNSSYS DETGLELGLG LGPSVTKANK SSRKWCEYGR ILTAKDFPNG FITRRFNNIC TDENIGSAST SASSQVVGWP PIRTYRMNSF NQSKITNADH
101: QQENGNKEIE SSNKKINHGN NTKNNDVDFV KVNMDGLPIG RKVNLSSHIC YETLAKILEE MFFKSTKTTN CGEKEQVTKS CKLLDGSSEF VLTYEDKDGD
201: WMLVGDVPWG MFLSNVKRLR IMRTTEAKGL GM

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.