Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015326.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY18243 | Canola | nucleus | 91.91 | 93.51 |
| CDY59182 | Canola | nucleus | 80.43 | 84.0 |
| CDY53196 | Canola | nucleus | 79.57 | 82.38 |
| AT1G04550.2 | Thale cress | cytosol | 83.4 | 82.01 |
| CDY19477 | Canola | nucleus | 72.77 | 72.77 |
| CDY17158 | Canola | nucleus | 72.77 | 72.46 |
| CDX84693 | Canola | nucleus | 72.77 | 70.66 |
| CDX79522 | Canola | nucleus | 73.62 | 70.33 |
| CDY51701 | Canola | nucleus | 41.28 | 48.26 |
| PGSC0003DMT400003784 | Potato | nucleus | 52.77 | 45.76 |
| PGSC0003DMT400075427 | Potato | nucleus | 45.11 | 45.69 |
| Solyc12g096980.1.1 | Tomato | nucleus | 45.11 | 45.49 |
| Solyc09g090910.1.1 | Tomato | nucleus | 53.19 | 44.33 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 60.0 | 43.93 |
| CDY46895 | Canola | cytosol | 13.19 | 43.06 |
| CDY38374 | Canola | nucleus | 41.7 | 41.18 |
| CDY35203 | Canola | nucleus | 41.28 | 39.92 |
| CDX87072 | Canola | cytosol | 27.23 | 36.57 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 40.43 | 35.06 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 40.0 | 34.69 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 25.53 | 34.48 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.11 | 33.91 |
| CDX95843 | Canola | plastid | 21.28 | 32.26 |
| CDY71609 | Canola | nucleus, plastid | 21.28 | 31.85 |
| CDX92140 | Canola | nucleus, plastid | 21.28 | 31.65 |
| CDY22876 | Canola | nucleus | 34.04 | 31.62 |
| CDY33844 | Canola | nucleus | 33.62 | 31.23 |
| CDX67874 | Canola | plastid | 22.98 | 31.21 |
| CDX82361 | Canola | cytosol, plastid | 20.85 | 31.21 |
| CDX87863 | Canola | nucleus | 33.62 | 31.1 |
| CDY27511 | Canola | cytosol, plastid | 22.98 | 31.03 |
| CDY48005 | Canola | cytosol, plastid | 22.98 | 31.03 |
| CDY19790 | Canola | cytosol | 25.53 | 30.77 |
| CDY25089 | Canola | plastid | 22.55 | 30.64 |
| CDY58757 | Canola | plastid | 22.13 | 30.23 |
| CDY53439 | Canola | nucleus | 34.89 | 30.04 |
| CDY46538 | Canola | nucleus | 34.47 | 30.0 |
| CDY11402 | Canola | plastid | 22.55 | 29.94 |
| CDY64626 | Canola | cytosol | 31.49 | 27.51 |
| CDY34957 | Canola | nucleus | 31.06 | 27.14 |
| CDY43104 | Canola | nucleus | 30.64 | 26.97 |
| CDX82399 | Canola | nucleus | 30.64 | 26.47 |
| CDX75884 | Canola | cytosol | 30.21 | 26.2 |
| CDX92888 | Canola | nucleus | 45.11 | 26.17 |
| CDX92077 | Canola | nucleus | 29.79 | 24.56 |
| CDX75231 | Canola | nucleus | 22.98 | 23.38 |
| CDY46058 | Canola | plastid | 16.6 | 23.35 |
| CDX68829 | Canola | nucleus | 22.55 | 23.25 |
| CDY13478 | Canola | nucleus | 22.55 | 21.81 |
| CDX72351 | Canola | nucleus | 22.55 | 21.46 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078DMQ0 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX89814 |
| ProteinID:CDX89814 | ProteinID:CDX89814.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150266001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI0002543EA0 | SEG:seg |
Description
BnaA10g02680D
Coordinates
chrLK031861:-:185616..186918
Molecular Weight (calculated)
25866.5 Da
IEP (calculated)
7.836
GRAVY (calculated)
-0.783
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGGSEFET GKSNLLPAES ELELGLGLSI GGGAWRERGR ILTAKDFPSV GSKRAADQSS SHQGQGASPP RSSQIVGWPP IGSHRMNKVN NQAPMKAAKE
101: EEEEEEGKKK NDETKDVSVQ GLGYVKVNMD GVGIGRKVDI RAHSSYENLA QTLEEMFFGM SGSTTSREKV KPLRLLDGSS EFVLTYEDKD GDWMLVGDVP
201: WRMFVTSVKR LRIMGTSEAN GLAPRHQEQK ERQRQ
101: EEEEEEGKKK NDETKDVSVQ GLGYVKVNMD GVGIGRKVDI RAHSSYENLA QTLEEMFFGM SGSTTSREKV KPLRLLDGSS EFVLTYEDKD GDWMLVGDVP
201: WRMFVTSVKR LRIMGTSEAN GLAPRHQEQK ERQRQ
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
Arabidopsis Description
IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.