Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022164.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY43104 | Canola | nucleus | 88.77 | 94.76 |
| CDY64626 | Canola | cytosol | 77.54 | 82.16 |
| CDY34957 | Canola | nucleus | 77.54 | 82.16 |
| CDX75884 | Canola | cytosol | 77.89 | 81.92 |
| AT3G16500.1 | Thale cress | nucleus | 76.49 | 81.04 |
| CDX82399 | Canola | nucleus | 76.49 | 80.15 |
| CDX87863 | Canola | nucleus | 56.14 | 62.99 |
| CDY46538 | Canola | nucleus | 58.6 | 61.85 |
| CDY53439 | Canola | nucleus | 58.95 | 61.54 |
| CDY22876 | Canola | nucleus | 54.04 | 60.87 |
| CDY33844 | Canola | nucleus | 53.68 | 60.47 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.47 | 48.28 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.47 | 48.28 |
| CDX87072 | Canola | cytosol | 29.12 | 47.43 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 36.49 | 46.22 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 36.49 | 45.81 |
| KRH09948 | Soybean | nucleus | 50.18 | 44.69 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 35.09 | 43.86 |
| Os01t0190300-01 | Rice | nucleus | 36.14 | 43.28 |
| Solyc03g121060.2.1 | Tomato | nucleus | 43.16 | 42.86 |
| PGSC0003DMT400006709 | Potato | nucleus | 42.46 | 42.76 |
| CDY19790 | Canola | cytosol | 28.77 | 42.05 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 33.33 | 41.67 |
| KRH23388 | Soybean | nucleus | 50.18 | 41.33 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 32.98 | 41.05 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 32.98 | 40.87 |
| EES17832 | Sorghum | nucleus | 34.39 | 40.5 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 35.09 | 40.49 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 32.63 | 40.43 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 34.74 | 40.08 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 32.63 | 39.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.75 | 38.64 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 32.63 | 37.96 |
| CDY51701 | Canola | nucleus | 26.67 | 37.81 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 33.33 | 37.7 |
| Os02t0228900-01 | Rice | nucleus | 39.65 | 37.67 |
| KRH44271 | Soybean | nucleus | 40.7 | 37.06 |
| KRH47203 | Soybean | nucleus | 41.05 | 36.91 |
| OQU84670 | Sorghum | nucleus | 37.19 | 36.3 |
| Zm00001d016277_P002 | Maize | nucleus | 36.49 | 34.78 |
| CDY46895 | Canola | cytosol | 8.42 | 33.33 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 34.74 | 33.33 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 42.81 | 33.24 |
| Os01t0741900-01 | Rice | nucleus | 38.6 | 32.84 |
| CDY17158 | Canola | nucleus | 27.02 | 32.63 |
| CDY53196 | Canola | nucleus | 25.96 | 32.6 |
| CDY59182 | Canola | nucleus | 25.61 | 32.44 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 49.82 | 32.35 |
| CDY19477 | Canola | nucleus | 26.67 | 32.34 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 33.33 | 32.2 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 32.98 | 31.97 |
| CDX84693 | Canola | nucleus | 27.02 | 31.82 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 37.19 | 31.64 |
| CDY38374 | Canola | nucleus | 26.32 | 31.51 |
| Os05t0523300-01 | Rice | nucleus | 36.14 | 31.5 |
| CDX79522 | Canola | nucleus | 27.02 | 31.3 |
| CDY35203 | Canola | nucleus | 26.67 | 31.28 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 37.54 | 31.2 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 38.25 | 30.88 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 36.84 | 30.79 |
| KXG33336 | Sorghum | nucleus | 38.95 | 30.41 |
| CDY71609 | Canola | nucleus, plastid | 16.49 | 29.94 |
| CDX89814 | Canola | nucleus | 24.56 | 29.79 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 37.19 | 29.69 |
| CDY18243 | Canola | nucleus | 23.86 | 29.44 |
| CDX82361 | Canola | cytosol, plastid | 16.14 | 29.3 |
| OQU86163 | Sorghum | golgi, plastid | 36.49 | 29.05 |
| KXG22376 | Sorghum | nucleus | 35.09 | 28.99 |
| Zm00001d038784_P001 | Maize | nucleus | 35.79 | 28.9 |
| CDX92140 | Canola | nucleus, plastid | 15.79 | 28.48 |
| CDX95843 | Canola | plastid | 15.44 | 28.39 |
| CDY25089 | Canola | plastid | 16.14 | 26.59 |
| CDX67874 | Canola | plastid | 15.79 | 26.01 |
| CDY58757 | Canola | plastid | 15.44 | 25.58 |
| CDY27511 | Canola | cytosol, plastid | 15.44 | 25.29 |
| CDY48005 | Canola | cytosol, plastid | 15.44 | 25.29 |
| CDY11402 | Canola | plastid | 15.44 | 24.86 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 22.81 | 23.99 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 22.11 | 23.25 |
| CDY46058 | Canola | plastid | 12.98 | 22.16 |
| CDX75231 | Canola | nucleus | 16.49 | 20.35 |
| CDX92888 | Canola | nucleus | 27.37 | 19.26 |
| CDY13478 | Canola | nucleus | 16.14 | 18.93 |
| CDX68829 | Canola | nucleus | 15.09 | 18.86 |
| CDX72351 | Canola | nucleus | 16.14 | 18.62 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078DT78 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX92077 |
| ProteinID:CDX92077 | ProteinID:CDX92077.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00153761001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0002547739 | : | : |
Description
BnaA05g23300D
Coordinates
chrLK031871:-:64968..66865
Molecular Weight (calculated)
31853.8 Da
IEP (calculated)
8.591
GRAVY (calculated)
-0.791
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGCPISRET CPKLLDLIPQ ERKWYHDKEK NNSDQEKKLE LRLAPPGGDE EDLSAMKKKK NLETRNNIKK EAEDKPIFNL SGNHFSPSNK TTYAPPHISH
101: KRTAPGPVVG WPPVRSFRKN LASSSSSKLG NDQINKSGEG EKQVEPKREG MFVKINMDSV PIGRKVDLNA YSTYEQLSLA VDKLFRGLLA AQRDTSGGEG
201: EEQPIIGLLN GKGEFTLTYE DNEGDKMLVG DVPWQMFVSS VKRLRVIKSS EISSALKFGC SKQRENEELK WLSGTSVCVE GSHSF
101: KRTAPGPVVG WPPVRSFRKN LASSSSSKLG NDQINKSGEG EKQVEPKREG MFVKINMDSV PIGRKVDLNA YSTYEQLSLA VDKLFRGLLA AQRDTSGGEG
201: EEQPIIGLLN GKGEFTLTYE DNEGDKMLVG DVPWQMFVSS VKRLRVIKSS EISSALKFGC SKQRENEELK WLSGTSVCVE GSHSF
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.