Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009867.1-P | Field mustard | cytosol | 99.43 | 98.3 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 96.55 | 96.55 |
| AT5G25890.1 | Thale cress | nucleus | 90.23 | 89.71 |
| CDX87072 | Canola | cytosol | 85.06 | 84.57 |
| CDY19790 | Canola | cytosol | 83.91 | 74.87 |
| CDY46895 | Canola | cytosol | 14.94 | 36.11 |
| CDY33844 | Canola | nucleus | 51.15 | 35.18 |
| CDY22876 | Canola | nucleus | 50.57 | 34.78 |
| Os01t0190300-01 | Rice | nucleus | 46.55 | 34.03 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 44.25 | 33.62 |
| CDX87863 | Canola | nucleus | 48.85 | 33.46 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 43.1 | 33.33 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 43.68 | 33.33 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 43.1 | 33.04 |
| CDY46538 | Canola | nucleus | 50.57 | 32.59 |
| CDY53439 | Canola | nucleus | 50.0 | 31.87 |
| CDY43104 | Canola | nucleus | 48.85 | 31.84 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 41.95 | 31.74 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 41.38 | 31.58 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 41.38 | 31.3 |
| CDY34957 | Canola | nucleus | 48.28 | 31.23 |
| CDY64626 | Canola | cytosol | 47.7 | 30.86 |
| CDY71609 | Canola | nucleus, plastid | 27.59 | 30.57 |
| CDY51701 | Canola | nucleus | 35.06 | 30.35 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 42.53 | 29.96 |
| CDX75884 | Canola | cytosol | 46.55 | 29.89 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 40.23 | 29.79 |
| CDX92077 | Canola | nucleus | 48.28 | 29.47 |
| CDX82399 | Canola | nucleus | 45.98 | 29.41 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 41.38 | 29.39 |
| EES17832 | Sorghum | nucleus | 40.8 | 29.34 |
| Os02t0228900-01 | Rice | nucleus | 50.57 | 29.33 |
| CDX82361 | Canola | cytosol, plastid | 26.44 | 29.3 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 41.95 | 28.97 |
| Zm00001d016277_P002 | Maize | nucleus | 48.28 | 28.09 |
| OQU84670 | Sorghum | nucleus | 47.13 | 28.08 |
| CDX92140 | Canola | nucleus, plastid | 25.29 | 27.85 |
| CDX95843 | Canola | plastid | 24.71 | 27.74 |
| CDX67874 | Canola | plastid | 27.01 | 27.17 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 38.51 | 27.13 |
| CDY48005 | Canola | cytosol, plastid | 27.01 | 27.01 |
| CDY27511 | Canola | cytosol, plastid | 27.01 | 27.01 |
| CDY58757 | Canola | plastid | 26.44 | 26.74 |
| CDY25089 | Canola | plastid | 26.44 | 26.59 |
| CDY59182 | Canola | nucleus | 33.91 | 26.22 |
| CDY53196 | Canola | nucleus | 33.91 | 25.99 |
| CDY19477 | Canola | nucleus | 35.06 | 25.96 |
| CDY17158 | Canola | nucleus | 35.06 | 25.85 |
| CDY18243 | Canola | nucleus | 33.91 | 25.54 |
| CDX89814 | Canola | nucleus | 34.48 | 25.53 |
| CDY35203 | Canola | nucleus | 35.63 | 25.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.83 | 25.32 |
| CDY38374 | Canola | nucleus | 34.48 | 25.21 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 42.53 | 24.92 |
| CDY11402 | Canola | plastid | 25.29 | 24.86 |
| CDX79522 | Canola | nucleus | 35.06 | 24.8 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 41.38 | 24.49 |
| Os01t0741900-01 | Rice | nucleus | 47.13 | 24.48 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 41.38 | 24.41 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 50.57 | 23.98 |
| CDX84693 | Canola | nucleus | 33.33 | 23.97 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.88 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.46 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 23.32 |
| Os05t0523300-01 | Rice | nucleus | 43.68 | 23.24 |
| KXG33336 | Sorghum | nucleus | 46.55 | 22.19 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 45.4 | 22.13 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 44.83 | 22.1 |
| Zm00001d038784_P001 | Maize | nucleus | 44.83 | 22.1 |
| OQU86163 | Sorghum | golgi, plastid | 45.4 | 22.07 |
| KXG22376 | Sorghum | nucleus | 43.68 | 22.03 |
| CDY46058 | Canola | plastid | 19.54 | 20.36 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 29.89 | 19.19 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 29.89 | 19.19 |
| CDX68829 | Canola | nucleus | 22.99 | 17.54 |
| CDX75231 | Canola | nucleus | 22.99 | 17.32 |
| CDY13478 | Canola | nucleus | 23.56 | 16.87 |
| CDX72351 | Canola | nucleus | 23.56 | 16.6 |
| CDX92888 | Canola | nucleus | 35.06 | 15.06 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078DI84 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX88204 |
| ProteinID:CDX88204 | ProteinID:CDX88204.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00147668001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EE3A80 | : | : |
Description
BnaA06g27950D
Coordinates
chrLK031854:+:1353862..1355208
Molecular Weight (calculated)
20135.0 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.768
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKRLELR LAPPCHQLTH NSNINGSKQR SLTKETSFVS NNRVEAAPVV GWPPVRSSRR YLTSQLKEEM KKIESDEERE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFKKDSS DLNRQYTLVY EDTEGDKVLV GDVPWEMFVS TVKRLHVLKT SHVSMLSPRK NCKE
101: YNNYQQLSHA VDQLFKKDSS DLNRQYTLVY EDTEGDKVLV GDVPWEMFVS TVKRLHVLKT SHVSMLSPRK NCKE
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.