Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15440.1 | CDY04062 | AT3G15440.1 | 21245844 |
| AT3G15440.1 | CDY37633 | AT3G15440.1 | 21245844 |
| AT3G15440.1 | CDY44403 | AT3G15440.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44403 | Canola | cytosol | 94.7 | 94.08 |
| Bra033091.1-P | Field mustard | cytosol | 94.7 | 92.26 |
| CDY37633 | Canola | cytosol | 47.02 | 63.39 |
| AT3G15440.1 | Thale cress | cytosol | 27.15 | 28.67 |
| AT3G14970.1 | Thale cress | cytosol | 38.41 | 26.36 |
| AT3G15740.1 | Thale cress | cytosol | 37.09 | 25.0 |
Protein Annotations
| EnsemblPlants:CDY04062 | EnsemblPlantsGene:GSBRNA2T00117667001 | ProteinID:CDY04062 | ProteinID:CDY04062.1 | UniParc:UPI0004EC63A2 | MapMan:35.2 |
Description
BnaC02g37770D
Coordinates
chrLK031948:-:866496..866951
Molecular Weight (calculated)
17633.5 Da
IEP (calculated)
3.793
GRAVY (calculated)
-0.228
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MVWFAYCDDE PDSFISFDPV FTDTQHNLTN PNFVFDFVLV YRRAPEPDSD SDDVLEDLCD LETQVFSETL EFDREWLIGG DRDQIKSNVF HILEMIQVPS
101: YSDIVHTLTI DLLDLKKHVS VSDSPEIERI RVEIDTIVPR FPDDVDMELE L
101: YSDIVHTLTI DLLDLKKHVS VSDSPEIERI RVEIDTIVPR FPDDVDMELE L
001: MVFDAVNPDP DSFVYYYPIY NDEGDFGRTQ NLMFKFHLCY NLAPEVNSDG EDENPLDLET LLVDRTHEFD KGLLFSGDRE QIQVIVCHIL DLIKAPRYID
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.