Factsheet for Bra033091.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033091.1-P
Bra033136.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15440.1	Bra033091.1-P	AT3G15440.1	21245844
AT3G15440.1	Bra033136.1-P	AT3G15440.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44403	Canola	cytosol	96.13	98.03
CDY04062	Canola	cytosol	92.26	94.7
Bra033136.1-P	Field mustard	cytosol	43.87	61.82
AT3G15440.1	Thale cress	cytosol	28.39	30.77
AT3G14970.1	Thale cress	cytosol	40.0	28.18
AT3G15740.1	Thale cress	cytosol	37.42	25.89

Protein Annotations

EnsemblPlants:Bra033091.1	EnsemblPlants:Bra033091.1-P	EnsemblPlantsGene:Bra033091	SEG:seg	UniParc:UPI0002546E4C	UniProt:M4EWA7
MapMan:35.2	:	:	:	:	:

Description

AT3G14970 (E=2e-015) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:21465329..21465796

Molecular Weight (calculated)

17997.9 Da

IEP (calculated)

3.847

GRAVY (calculated)

-0.250

Length

155 amino acids

Sequence
(BLAST)

001: MVWFAYCDDE PDSFISFNPV FTDTQHNLTN NPNIVFDFVL VYRRAPEPDS DSDDALDDLC DLETRVFSET LEFDREWLIG GGDREQIKSN VFHILEMIQV
101: PSYSDIVHTL TIDILDLKKH VSVSDSPEIE RIRVEIDTIV PRFPDDVDME VELEL

Best Arabidopsis Sequence Match ( AT3G14970.1 )
(BLAST)

001: MVFDAVNPDP DSFVYYYPIY NDEGDFGRTQ NLMFKFHLCY NLAPEVNSDG EDENPLDLET LLVDRTHEFD KGLLFSGDRE QIQVIVCHIL DLIKAPRYID
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.