Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G15740.1 | Thale cress | cytosol | 55.91 | 54.91 |
| Bra033091.1-P | Field mustard | cytosol | 28.18 | 40.0 |
| CDY44403 | Canola | cytosol | 27.27 | 39.47 |
| CDY04062 | Canola | cytosol | 26.36 | 38.41 |
| Bra033136.1-P | Field mustard | cytosol | 17.27 | 34.55 |
| CDY37633 | Canola | cytosol | 16.82 | 33.04 |
| AT3G15440.1 | Thale cress | cytosol | 17.27 | 26.57 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:820726 | UniProt:A0A178VKD5 | ProteinID:AEE75595.1 | ArrayExpress:AT3G14970 |
| EnsemblPlantsGene:AT3G14970 | RefSeq:AT3G14970 | TAIR:AT3G14970 | RefSeq:AT3G14970-TAIR-G | EnsemblPlants:AT3G14970.1 | TAIR:AT3G14970.1 |
| Unigene:At.65090 | ProteinID:BAA97060.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_188115.1 | ProteinID:OAP05272.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR15710 | PANTHER:PTHR15710:SF4 |
| UniProt:Q9LKA8 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AA3D0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKA8]
Coordinates
chr3:-:5039071..5039733
Molecular Weight (calculated)
25059.8 Da
IEP (calculated)
4.149
GRAVY (calculated)
-0.052
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFDAVNPDP DSFVYYYPIY NDEGDFGRTQ NLMFKFHLCY NLAPEVNSDG EDENPLDLET LLVDRTHEFD KGLLFSGDRE QIQVIVCHIL DLIKAPRYID
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.