Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G14970.1 | Thale cress | cytosol | 54.91 | 55.91 |
| Bra033091.1-P | Field mustard | cytosol | 25.89 | 37.42 |
| CDY04062 | Canola | cytosol | 25.0 | 37.09 |
| CDY44403 | Canola | cytosol | 25.0 | 36.84 |
| Bra033136.1-P | Field mustard | cytosol | 17.41 | 35.45 |
| CDY37633 | Canola | cytosol | 16.52 | 33.04 |
| AT3G15440.1 | Thale cress | cytosol | 20.98 | 32.87 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:820817 | ProteinID:AEE75721.1 | ArrayExpress:AT3G15740 | EnsemblPlantsGene:AT3G15740 |
| RefSeq:AT3G15740 | TAIR:AT3G15740 | RefSeq:AT3G15740-TAIR-G | EnsemblPlants:AT3G15740.1 | TAIR:AT3G15740.1 | ProteinID:BAB02305.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009555 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_188195.1 | PFAM:PF13639 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020090 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 |
| PANTHER:PTHR15710 | PANTHER:PTHR15710:SF4 | UniProt:Q9LW05 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000009ED57 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LW05]
Coordinates
chr3:-:5333769..5334553
Molecular Weight (calculated)
25532.7 Da
IEP (calculated)
4.143
GRAVY (calculated)
-0.386
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFYVNDNVD NVIDVKRIYN DYDGELRKSQ KLFFDFKVHY TRAEEEDDDV EEEEDFPDFD NLQTLTLEQT HEFDRDWLFG GDGDHSLAIV YHILDSLQVP
101: PYSAIVNTLA DEIKDLKKDG AKDVERVQVK IGVTVSRFPG EDDHVDVQVQ LAVAPANDEA VEMHLETLVV ENEGYCVICM DNIRVGSDVE AGRMPCSHVF
201: HRTCGEEWLR NSGICPVCRA LFPA
101: PYSAIVNTLA DEIKDLKKDG AKDVERVQVK IGVTVSRFPG EDDHVDVQVQ LAVAPANDEA VEMHLETLVV ENEGYCVICM DNIRVGSDVE AGRMPCSHVF
201: HRTCGEEWLR NSGICPVCRA LFPA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.