Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra033091.1-P | |
| Bra033136.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15440.1 | Bra033091.1-P | AT3G15440.1 | 21245844 |
| AT3G15440.1 | Bra033136.1-P | AT3G15440.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37633 | Canola | cytosol | 91.82 | 90.18 |
| Bra033091.1-P | Field mustard | cytosol | 61.82 | 43.87 |
| AT3G15440.1 | Thale cress | cytosol | 29.09 | 22.38 |
| AT3G15740.1 | Thale cress | cytosol | 35.45 | 17.41 |
| AT3G14970.1 | Thale cress | cytosol | 34.55 | 17.27 |
Protein Annotations
Description
AT3G15740 (E=2e-010) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:16829918..16830250
Molecular Weight (calculated)
13256.2 Da
IEP (calculated)
3.814
GRAVY (calculated)
-0.460
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MVWYGYCDDE PDTFISFDPV FADTQHNLKN PNFSFVFDFE LVYRQAPEPN SDSDEDEDFC NLETRILRQT HEFDRDWLIG GDREQIQANV FQILDFMLFL
101: VSFCHYEYIQ
101: VSFCHYEYIQ
001: MVFDAVNPDP DSFVYYYPIY NDEGDFGRTQ NLMFKFHLCY NLAPEVNSDG EDENPLDLET LLVDRTHEFD KGLLFSGDRE QIQVIVCHIL DLIKAPRYID
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
101: VVTELIDAIL DLKKCDKISN VKEVDVVINV IVWRFPDDDD DDVDVRLAVA PASNEAVEQH LETVVVENES WCVICMDKIR IGLDVAAGRM PCSHVFHRTC
201: GEDWLRCSGI CPVCRAMFPT
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.