CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04062
CDY37633
CDY44403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15440.1	CDY04062	AT3G15440.1	21245844
AT3G15440.1	CDY37633	AT3G15440.1	21245844
AT3G15440.1	CDY44403	AT3G15440.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033136.1-P	Field mustard	cytosol	90.18	91.82
CDY04062	Canola	cytosol	63.39	47.02
CDY44403	Canola	cytosol	62.5	46.05
AT3G15440.1	Thale cress	cytosol	27.68	21.68
AT3G14970.1	Thale cress	cytosol	33.04	16.82
AT3G15740.1	Thale cress	cytosol	33.04	16.52

Protein Annotations

EnsemblPlants:CDY37633	EnsemblPlantsGene:GSBRNA2T00064293001	ProteinID:CDY37633	ProteinID:CDY37633.1	SEG:seg	UniParc:UPI0004EEC85C
UniProt:A0A078HL90	MapMan:35.2	:	:	:	:

Description

BnaCnng08480DBnaCnng08480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL90]

Coordinates

chrLK032404:+:296980..297573

Molecular Weight (calculated)

13441.4 Da

IEP (calculated)

3.853

GRAVY (calculated)

-0.479

Length

112 amino acids

Sequence
(BLAST)

001: MVWYGYCDDE PDTFISFDPV FTDTQHNLKN PNFSFVFDFE LVYRRAPEPN SDSDSDEDLE DLCNLETRIV RQTHEFDRDW LIGGDREQIQ ANVVYVDFML
101: FLVSFCHYEY IQ

Best Arabidopsis Sequence Match ( AT3G15440.1 )
(BLAST)

001: MECIVDDVSD STCMVTPIYY SKETTQDRQT FLFDFEVVYT KVPEPNSDGE SDYMSSKVKT RTTNQLQRYG RDEFIGQDEE QIKATIYEIL NDVGVPPYLG
101: IMKTFAEEIQ SILNSPLEKL EKIKVKIEVV AHMFPEDDEI DVE

Arabidopsis Description

MJK13.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9LE10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.