Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G123500.1 | Wheat | nucleus | 97.33 | 96.48 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 89.33 | 81.38 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 61.33 | 60.53 |
| EES17832 | Sorghum | nucleus | 64.44 | 59.92 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 60.44 | 55.06 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 57.78 | 51.59 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 16.44 | 45.12 |
| AT5G25890.1 | Thale cress | nucleus | 33.78 | 43.43 |
| CDX87072 | Canola | cytosol | 33.78 | 43.43 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 33.33 | 43.1 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 33.33 | 43.1 |
| Bra009867.1-P | Field mustard | cytosol | 33.33 | 42.61 |
| Bra036557.1-P | Field mustard | nucleus | 32.44 | 41.71 |
| Bra018938.1-P | Field mustard | nucleus | 44.89 | 39.92 |
| CDY33844 | Canola | nucleus | 44.89 | 39.92 |
| CDY22876 | Canola | nucleus | 44.89 | 39.92 |
| PGSC0003DMT400006709 | Potato | nucleus | 49.78 | 39.58 |
| AT3G16500.1 | Thale cress | nucleus | 46.67 | 39.03 |
| CDX87863 | Canola | nucleus | 44.0 | 38.98 |
| CDY34957 | Canola | nucleus | 46.22 | 38.66 |
| Bra021184.1-P | Field mustard | nucleus | 46.22 | 38.66 |
| CDY64626 | Canola | cytosol | 46.22 | 38.66 |
| Solyc03g121060.2.1 | Tomato | nucleus | 48.89 | 38.33 |
| Bra001634.1-P | Field mustard | nucleus | 46.22 | 38.24 |
| CDX82399 | Canola | nucleus | 46.22 | 38.24 |
| CDY43104 | Canola | nucleus | 45.33 | 38.2 |
| AT1G51950.1 | Thale cress | nucleus | 44.89 | 37.83 |
| Bra014303.1-P | Field mustard | nucleus | 45.33 | 37.78 |
| CDY19790 | Canola | cytosol | 32.44 | 37.44 |
| CDY46538 | Canola | nucleus | 44.89 | 37.41 |
| CDX75884 | Canola | cytosol | 44.89 | 37.27 |
| CDY53439 | Canola | nucleus | 44.44 | 36.63 |
| CDX92077 | Canola | nucleus | 46.22 | 36.49 |
| Bra022164.1-P | Field mustard | nucleus | 46.22 | 36.49 |
| KRH09948 | Soybean | nucleus | 51.56 | 36.25 |
| KRH47203 | Soybean | nucleus | 48.0 | 34.07 |
| KRH44271 | Soybean | nucleus | 47.11 | 33.87 |
| KRH23388 | Soybean | nucleus | 50.22 | 32.66 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 49.33 | 32.55 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 48.89 | 31.88 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 41.33 | 31.63 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 24.44 | 31.43 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 51.56 | 26.42 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 30.22 | 25.19 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 30.67 | 24.21 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 29.78 | 18.56 |
| TraesCS1A01G082700.2 | Wheat | plastid | 18.22 | 15.59 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF33 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1A01G122600 | EnsemblPlants:TraesCS1A01G122600.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:139553024..139554372
Molecular Weight (calculated)
23494.7 Da
IEP (calculated)
9.641
GRAVY (calculated)
-0.486
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWNGSKDEE ERGLELSLGL PGYFSGSPGQ EGLEGKGGRR GAAGAGAKGR SNGSKPSRPA AAAPVVGWPP VRSFRRNLAS SSKPPAAEPR HGAGGKADGS
101: IYKGRFVKIN MDGVPIGRKV DLKAHGSYGK LADAVDHLFQ GLLAAQRDES SCAGEKPAAI TGLLDGSGEY TLVYEDDEGD QMLVGDVPWD MFIATAKRLR
201: VLRSSDLNAS SLRAAVSRKR GAAEC
101: IYKGRFVKIN MDGVPIGRKV DLKAHGSYGK LADAVDHLFQ GLLAAQRDES SCAGEKPAAI TGLLDGSGEY TLVYEDDEGD QMLVGDVPWD MFIATAKRLR
201: VLRSSDLNAS SLRAAVSRKR GAAEC
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.