Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87863 | Canola | nucleus | 81.27 | 85.43 |
| Bra014303.1-P | Field mustard | nucleus | 82.4 | 81.48 |
| CDY33844 | Canola | nucleus | 77.15 | 81.42 |
| Bra018938.1-P | Field mustard | nucleus | 77.15 | 81.42 |
| CDY22876 | Canola | nucleus | 76.78 | 81.03 |
| CDY46538 | Canola | nucleus | 81.65 | 80.74 |
| CDY53439 | Canola | nucleus | 82.4 | 80.59 |
| AT3G16500.1 | Thale cress | nucleus | 67.79 | 67.29 |
| AT5G25890.1 | Thale cress | nucleus | 33.33 | 50.86 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 38.2 | 44.93 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 37.83 | 44.89 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 37.45 | 43.48 |
| PGSC0003DMT400006709 | Potato | nucleus | 46.07 | 43.46 |
| KRH09948 | Soybean | nucleus | 52.06 | 43.44 |
| Solyc03g121060.2.1 | Tomato | nucleus | 46.44 | 43.21 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 36.33 | 42.17 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 35.96 | 42.11 |
| Os01t0190300-01 | Rice | nucleus | 37.45 | 42.02 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 35.58 | 41.67 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 35.58 | 41.48 |
| EES17832 | Sorghum | nucleus | 36.7 | 40.5 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 37.08 | 40.08 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 35.21 | 40.0 |
| KRH23388 | Soybean | nucleus | 51.31 | 39.6 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 36.33 | 39.59 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 36.7 | 38.89 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 35.58 | 38.46 |
| Os02t0228900-01 | Rice | nucleus | 42.7 | 38.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.07 | 37.34 |
| OQU84670 | Sorghum | nucleus | 40.07 | 36.64 |
| Zm00001d016277_P002 | Maize | nucleus | 40.82 | 36.45 |
| KRH47203 | Soybean | nucleus | 43.07 | 36.28 |
| KRH44271 | Soybean | nucleus | 41.95 | 35.78 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 37.83 | 34.01 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 46.44 | 33.79 |
| AT2G33310.2 | Thale cress | nucleus | 31.09 | 33.6 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 37.08 | 33.56 |
| AT1G04550.2 | Thale cress | cytosol | 29.96 | 33.47 |
| Os01t0741900-01 | Rice | nucleus | 41.95 | 33.43 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 36.7 | 33.33 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 41.2 | 32.84 |
| Os05t0523300-01 | Rice | nucleus | 40.07 | 32.72 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 53.18 | 32.35 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 40.82 | 31.96 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 18.73 | 31.65 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 40.45 | 31.49 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 41.57 | 31.09 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 40.82 | 30.88 |
| KXG33336 | Sorghum | nucleus | 40.82 | 29.86 |
| KXG22376 | Sorghum | nucleus | 37.45 | 28.99 |
| OQU86163 | Sorghum | golgi, plastid | 38.58 | 28.77 |
| AT1G04100.1 | Thale cress | cytosol | 27.72 | 28.35 |
| Zm00001d038784_P001 | Maize | nucleus | 37.45 | 28.33 |
| AT3G62100.1 | Thale cress | plastid | 17.98 | 27.91 |
| AT2G46990.1 | Thale cress | plastid | 17.6 | 26.86 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 28.84 | 25.5 |
| AT4G32280.1 | Thale cress | cytosol | 18.35 | 19.52 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | EntrezGene:841623 | ProteinID:AAF99863.1 | ProteinID:AEE32738.1 | EMBL:AF367263 |
| ArrayExpress:AT1G51950 | EnsemblPlantsGene:AT1G51950 | RefSeq:AT1G51950 | TAIR:AT1G51950 | RefSeq:AT1G51950-TAIR-G | EnsemblPlants:AT1G51950.1 |
| TAIR:AT1G51950.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EMBL:AY056062 | EMBL:AY088406 | EMBL:AY669797 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009734 | GO:GO:0009987 | Symbol:IAA18 | InterPro:IPR000270 | RefSeq:NP_175607.1 | UniProt:O24408 |
| InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | UniProt:Q2VWA3 |
| SUPFAM:SSF54277 | EMBL:U49074 | UniParc:UPI0000000AB5 | SEG:seg | : | : |
Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
Coordinates
chr1:+:19305081..19307518
Molecular Weight (calculated)
29899.6 Da
IEP (calculated)
9.821
GRAVY (calculated)
-0.784
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.