Factsheet for AT1G04550.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53196	Canola	nucleus	79.5	83.7
CDY59182	Canola	nucleus	78.66	83.56
CDX89814	Canola	nucleus	82.01	83.4
Bra015326.1-P	Field mustard	nucleus	82.01	83.4
CDY18243	Canola	nucleus	79.5	82.25
AT2G33310.2	Thale cress	nucleus	75.73	73.28
Bra032503.1-P	Field mustard	nucleus	79.5	61.29
PGSC0003DMT400003784	Potato	nucleus	55.65	49.08
Solyc09g090910.1.1	Tomato	nucleus	56.49	47.87
PGSC0003DMT400075427	Potato	nucleus	46.44	47.84
Solyc12g096980.1.1	Tomato	nucleus	46.03	47.21
VIT_05s0049g01970.t01	Wine grape	nucleus	60.25	44.86
AT1G04100.1	Thale cress	cytosol	39.75	36.4
AT4G28640.2	Thale cress	cytosol, nucleus, plastid	44.77	35.43
AT5G25890.1	Thale cress	nucleus	25.52	34.86
AT3G17600.1	Thale cress	nucleus, plastid	22.18	33.54
AT3G62100.1	Thale cress	plastid	22.59	31.4
AT2G46990.1	Thale cress	plastid	22.18	30.29
AT1G51950.1	Thale cress	nucleus	33.47	29.96
AT3G16500.1	Thale cress	nucleus	32.64	29.0
AT4G32280.1	Thale cress	cytosol	22.59	21.51

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:839495	ProteinID:AAB80631.1	ProteinID:AEE27713.1	EMBL:AF332398
ArrayExpress:AT1G04550	EnsemblPlantsGene:AT1G04550	RefSeq:AT1G04550	TAIR:AT1G04550	RefSeq:AT1G04550-TAIR-G	EnsemblPlants:AT1G04550.2
TAIR:AT1G04550.2	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EMBL:AY065240	EMBL:AY088042	EMBL:AY096535
Unigene:At.10466	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009790	GO:GO:0009880	GO:GO:0009987	GO:GO:0010051
GO:GO:0045892	GO:GO:0048364	Symbol:IAA12	InterPro:IPR000270	RefSeq:NP_171949.1	InterPro:PB1_dom
PFAM:PF02309	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	UniProt:Q38830	SUPFAM:SSF54277
EMBL:U18414	UniParc:UPI00000016D8	SEG:seg	:	:	:

Description

IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]

Coordinates

chr1:+:1240294..1242157

Molecular Weight (calculated)

26287.5 Da

IEP (calculated)

9.945

GRAVY (calculated)

-0.579

Length

239 amino acids

Sequence
(BLAST)

001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.