Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53196 | Canola | nucleus | 91.56 | 90.75 |
| CDX89814 | Canola | nucleus | 84.0 | 80.43 |
| CDY18243 | Canola | nucleus | 81.78 | 79.65 |
| AT1G04550.2 | Thale cress | cytosol | 83.56 | 78.66 |
| CDY19477 | Canola | nucleus | 74.22 | 71.06 |
| CDY17158 | Canola | nucleus | 73.33 | 69.92 |
| CDX84693 | Canola | nucleus | 73.33 | 68.18 |
| CDX79522 | Canola | nucleus | 73.33 | 67.07 |
| CDY51701 | Canola | nucleus | 41.78 | 46.77 |
| PGSC0003DMT400075427 | Potato | nucleus | 46.22 | 44.83 |
| PGSC0003DMT400003784 | Potato | nucleus | 53.33 | 44.28 |
| Solyc12g096980.1.1 | Tomato | nucleus | 45.78 | 44.21 |
| Solyc09g090910.1.1 | Tomato | nucleus | 54.67 | 43.62 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 58.67 | 41.12 |
| CDY38374 | Canola | nucleus | 42.22 | 39.92 |
| CDY46895 | Canola | cytosol | 12.44 | 38.89 |
| CDY35203 | Canola | nucleus | 41.78 | 38.68 |
| CDX87072 | Canola | cytosol | 28.0 | 36.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 26.22 | 33.91 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.78 | 33.33 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 39.56 | 32.84 |
| CDX87863 | Canola | nucleus | 36.89 | 32.68 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 39.11 | 32.47 |
| CDY22876 | Canola | nucleus | 36.44 | 32.41 |
| CDY33844 | Canola | nucleus | 36.0 | 32.02 |
| CDY46538 | Canola | nucleus | 37.33 | 31.11 |
| CDY53439 | Canola | nucleus | 37.33 | 30.77 |
| CDY71609 | Canola | nucleus, plastid | 21.33 | 30.57 |
| CDX95843 | Canola | plastid | 20.89 | 30.32 |
| CDY19790 | Canola | cytosol | 26.22 | 30.26 |
| CDX92140 | Canola | nucleus, plastid | 20.89 | 29.75 |
| CDY25089 | Canola | plastid | 22.67 | 29.48 |
| CDX82361 | Canola | cytosol, plastid | 20.44 | 29.3 |
| CDX67874 | Canola | plastid | 22.22 | 28.9 |
| CDY64626 | Canola | cytosol | 34.22 | 28.62 |
| CDY34957 | Canola | nucleus | 33.78 | 28.25 |
| CDY48005 | Canola | cytosol, plastid | 21.78 | 28.16 |
| CDY27511 | Canola | cytosol, plastid | 21.78 | 28.16 |
| CDY43104 | Canola | nucleus | 33.33 | 28.09 |
| CDY58757 | Canola | plastid | 21.33 | 27.91 |
| CDY11402 | Canola | plastid | 21.78 | 27.68 |
| CDX82399 | Canola | nucleus | 33.33 | 27.57 |
| CDX75884 | Canola | cytosol | 32.89 | 27.31 |
| CDX92077 | Canola | nucleus | 32.44 | 25.61 |
| CDX92888 | Canola | nucleus | 45.33 | 25.19 |
| CDX75231 | Canola | nucleus | 22.67 | 22.08 |
| CDX68829 | Canola | nucleus | 22.22 | 21.93 |
| CDY46058 | Canola | plastid | 16.0 | 21.56 |
| CDY13478 | Canola | nucleus | 21.78 | 20.16 |
| CDX72351 | Canola | nucleus | 21.78 | 19.84 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078J768 | UniProt:A0A078J768 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY59182 | ProteinID:CDY59182 | ProteinID:CDY59182.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00025700001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI0004EEB0B8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g50150DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078J768]
Coordinates
chrLK033736:+:32712..34129
Molecular Weight (calculated)
24486.2 Da
IEP (calculated)
10.314
GRAVY (calculated)
-0.597
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGSEFELG KTNLLPAESE LELGLGLSLG SGAWRERGRI LTAKDFPSVG SKRAAADSSS SHHGASPPRS SQVVGWPPVG SHRMNSLANK QAVKAEQREG
101: KKKVMKEDEP KDVSVKGSGF VKANKDGVGV GRKVDVRAHS SYENLAQTLE EMFFGRTGTT SMEKVKPLRL LDGSSEFVLT YEDKEGDWML VGDVPWRMFI
201: TSVKRLRIMG TSGASGLAPR HQEQK
101: KKKVMKEDEP KDVSVKGSGF VKANKDGVGV GRKVDVRAHS SYENLAQTLE EMFFGRTGTT SMEKVKPLRL LDGSSEFVLT YEDKEGDWML VGDVPWRMFI
201: TSVKRLRIMG TSGASGLAPR HQEQK
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
Arabidopsis Description
IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.