Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92077 | Canola | nucleus | 94.76 | 88.77 |
| CDY64626 | Canola | cytosol | 84.64 | 84.01 |
| CDY34957 | Canola | nucleus | 84.64 | 84.01 |
| CDX75884 | Canola | cytosol | 85.02 | 83.76 |
| AT3G16500.1 | Thale cress | nucleus | 83.15 | 82.53 |
| CDX82399 | Canola | nucleus | 83.52 | 81.99 |
| CDX87863 | Canola | nucleus | 62.55 | 65.75 |
| CDY46538 | Canola | nucleus | 63.67 | 62.96 |
| CDY22876 | Canola | nucleus | 59.55 | 62.85 |
| CDY33844 | Canola | nucleus | 59.55 | 62.85 |
| CDY53439 | Canola | nucleus | 64.04 | 62.64 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 31.84 | 48.85 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 31.84 | 48.85 |
| CDX87072 | Canola | cytosol | 31.84 | 48.57 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 38.2 | 45.33 |
| KRH09948 | Soybean | nucleus | 54.31 | 45.31 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 38.2 | 44.93 |
| Os01t0190300-01 | Rice | nucleus | 38.95 | 43.7 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 37.08 | 43.42 |
| Solyc03g121060.2.1 | Tomato | nucleus | 46.07 | 42.86 |
| PGSC0003DMT400006709 | Potato | nucleus | 45.32 | 42.76 |
| CDY19790 | Canola | cytosol | 31.09 | 42.56 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 35.96 | 42.11 |
| KRH23388 | Soybean | nucleus | 54.31 | 41.91 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 35.58 | 41.48 |
| EES17832 | Sorghum | nucleus | 37.45 | 41.32 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 35.58 | 41.3 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 35.21 | 40.87 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 37.08 | 40.08 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 35.96 | 38.87 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 34.08 | 38.72 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 35.96 | 38.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.82 | 37.99 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 34.83 | 37.96 |
| CDY51701 | Canola | nucleus | 28.46 | 37.81 |
| Os02t0228900-01 | Rice | nucleus | 41.95 | 37.33 |
| KRH44271 | Soybean | nucleus | 43.45 | 37.06 |
| KRH47203 | Soybean | nucleus | 43.82 | 36.91 |
| OQU84670 | Sorghum | nucleus | 38.95 | 35.62 |
| Zm00001d016277_P002 | Maize | nucleus | 38.2 | 34.11 |
| CDY59182 | Canola | nucleus | 28.09 | 33.33 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 37.08 | 33.33 |
| CDY46895 | Canola | cytosol | 8.99 | 33.33 |
| Os01t0741900-01 | Rice | nucleus | 41.57 | 33.13 |
| CDY53196 | Canola | nucleus | 28.09 | 33.04 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 53.93 | 32.8 |
| CDY17158 | Canola | nucleus | 28.84 | 32.63 |
| CDY19477 | Canola | nucleus | 28.46 | 32.34 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 35.58 | 32.31 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 35.58 | 32.2 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 44.19 | 32.15 |
| CDX84693 | Canola | nucleus | 28.46 | 31.41 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 39.33 | 31.34 |
| Os05t0523300-01 | Rice | nucleus | 38.2 | 31.19 |
| CDY38374 | Canola | nucleus | 27.72 | 31.09 |
| CDX79522 | Canola | nucleus | 28.46 | 30.89 |
| CDY35203 | Canola | nucleus | 28.09 | 30.86 |
| CDX89814 | Canola | nucleus | 26.97 | 30.64 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.33 | 30.61 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 38.95 | 30.5 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 40.07 | 30.31 |
| CDY71609 | Canola | nucleus, plastid | 17.6 | 29.94 |
| CDY18243 | Canola | nucleus | 25.84 | 29.87 |
| KXG33336 | Sorghum | nucleus | 40.45 | 29.59 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 39.33 | 29.41 |
| OQU86163 | Sorghum | golgi, plastid | 39.33 | 29.33 |
| CDX82361 | Canola | cytosol, plastid | 17.23 | 29.3 |
| KXG22376 | Sorghum | nucleus | 37.83 | 29.28 |
| Zm00001d038784_P001 | Maize | nucleus | 38.2 | 28.9 |
| CDX92140 | Canola | nucleus, plastid | 16.85 | 28.48 |
| CDX95843 | Canola | plastid | 16.48 | 28.39 |
| CDY25089 | Canola | plastid | 17.23 | 26.59 |
| CDX67874 | Canola | plastid | 16.85 | 26.01 |
| CDY58757 | Canola | plastid | 16.48 | 25.58 |
| CDY11402 | Canola | plastid | 16.85 | 25.42 |
| CDY27511 | Canola | cytosol, plastid | 16.48 | 25.29 |
| CDY48005 | Canola | cytosol, plastid | 16.48 | 25.29 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 23.97 | 23.62 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 23.22 | 22.88 |
| CDY46058 | Canola | plastid | 13.86 | 22.16 |
| CDX75231 | Canola | nucleus | 17.6 | 20.35 |
| CDX92888 | Canola | nucleus | 28.84 | 19.01 |
| CDY13478 | Canola | nucleus | 17.23 | 18.93 |
| CDX68829 | Canola | nucleus | 16.1 | 18.86 |
| CDX72351 | Canola | nucleus | 17.23 | 18.62 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078I0N4 | UniProt:A0A078I0N4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY43104 | ProteinID:CDY43104 | ProteinID:CDY43104.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00076071001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0004EE5968 |
Description
BnaC05g36730DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0N4]
Coordinates
chrLK032545:-:160822..162691
Molecular Weight (calculated)
29899.5 Da
IEP (calculated)
9.307
GRAVY (calculated)
-0.846
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGCPRSRET CPKLLDLIPQ ERKWYHNEEK NNSDQEKKLE LRLAPPGGDE EDLSAMKKTN LDTRNNIKKE AEDKPIFNLS GNHFSPSNKT TYAPPHISHK
101: RTAPGPVVGW PPVRSFRKNL ASSSSSKLGN DQINKSGEGE KQVEPKRDGM FVKINMDSVP IGRKVDLNAY STYEQLSFAV DKLFRGLLAA QRDASGGEGE
201: EKPIIGLLNG KGEFTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKSSE ISSALKFGCS KQEKMRN
101: RTAPGPVVGW PPVRSFRKNL ASSSSSKLGN DQINKSGEGE KQVEPKRDGM FVKINMDSVP IGRKVDLNAY STYEQLSFAV DKLFRGLLAA QRDASGGEGE
201: EKPIIGLLNG KGEFTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKSSE ISSALKFGCS KQEKMRN
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.