Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015289.1-P | Field mustard | nucleus | 97.42 | 97.42 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 93.36 | 93.36 |
| AT1G04100.1 | Thale cress | cytosol | 70.11 | 72.8 |
| CDY38374 | Canola | nucleus | 43.17 | 49.16 |
| CDY51701 | Canola | nucleus | 36.16 | 48.76 |
| CDY35203 | Canola | nucleus | 42.44 | 47.33 |
| CDY46895 | Canola | cytosol | 12.18 | 45.83 |
| CDX89814 | Canola | nucleus | 35.06 | 40.43 |
| CDY53196 | Canola | nucleus | 33.58 | 40.09 |
| CDY59182 | Canola | nucleus | 32.84 | 39.56 |
| CDX79522 | Canola | nucleus | 35.79 | 39.43 |
| CDY17158 | Canola | nucleus | 34.32 | 39.41 |
| CDX84693 | Canola | nucleus | 35.06 | 39.26 |
| CDY19477 | Canola | nucleus | 33.95 | 39.15 |
| CDX95843 | Canola | plastid | 22.14 | 38.71 |
| CDX92140 | Canola | nucleus, plastid | 22.51 | 38.61 |
| CDY18243 | Canola | nucleus | 32.84 | 38.53 |
| CDY71609 | Canola | nucleus, plastid | 21.4 | 36.94 |
| CDX67874 | Canola | plastid | 22.51 | 35.26 |
| CDX82361 | Canola | cytosol, plastid | 20.3 | 35.03 |
| CDY25089 | Canola | plastid | 22.14 | 34.68 |
| CDY58757 | Canola | plastid | 21.77 | 34.3 |
| CDY48005 | Canola | cytosol, plastid | 21.77 | 33.91 |
| CDY27511 | Canola | cytosol, plastid | 21.77 | 33.91 |
| CDY11402 | Canola | plastid | 21.77 | 33.33 |
| CDX87072 | Canola | cytosol | 20.66 | 32.0 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 19.19 | 29.89 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 19.19 | 29.89 |
| CDY46058 | Canola | plastid | 17.71 | 28.74 |
| CDY22876 | Canola | nucleus | 25.46 | 27.27 |
| CDY19790 | Canola | cytosol | 19.56 | 27.18 |
| CDX92888 | Canola | nucleus | 40.22 | 26.91 |
| CDY33844 | Canola | nucleus | 24.72 | 26.48 |
| CDY34957 | Canola | nucleus | 26.2 | 26.39 |
| CDX87863 | Canola | nucleus | 24.72 | 26.38 |
| CDY46538 | Canola | nucleus | 26.2 | 26.3 |
| CDY64626 | Canola | cytosol | 25.83 | 26.02 |
| CDY53439 | Canola | nucleus | 25.83 | 25.64 |
| CDX82399 | Canola | nucleus | 25.09 | 25.0 |
| CDX75884 | Canola | cytosol | 24.72 | 24.72 |
| CDY43104 | Canola | nucleus | 23.62 | 23.97 |
| CDX68829 | Canola | nucleus | 19.19 | 22.81 |
| CDX92077 | Canola | nucleus | 23.99 | 22.81 |
| CDX75231 | Canola | nucleus | 18.82 | 22.08 |
| CDY13478 | Canola | nucleus | 19.19 | 21.4 |
| CDX72351 | Canola | nucleus | 18.82 | 20.65 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078DMS4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX89844 |
| ProteinID:CDX89844 | ProteinID:CDX89844.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150305001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF48 | SUPFAM:SSF54277 | UniParc:UPI0004EEFC94 | SEG:seg | : |
Description
BnaA10g02380D
Coordinates
chrLK031861:-:372097..373755
Molecular Weight (calculated)
28845.8 Da
IEP (calculated)
5.181
GRAVY (calculated)
-0.307
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFRDVYSS SGSVNVMIGV SSPAEEGDDD NAAAAALSSE DSCSPDETVA GTELDLALGL SIGLNRSRNH SSKVRSFSSS LASSSSSSLT KESGTKRSAD
101: SSAAASKGQV AVGWPPLRTY RINSLVNQAK SVPTEDDIQK DTTTTTTKNS VVAAVKNDEV GFIKSPMLVK VTMDGVIIGR KIDLNALDSY EALAKTLEQM
201: FFHTPSSVTT TRCKETRGAS ELLDGSSEYI ITYQDKDGDW MLVGDVPWLM FLGCVKRLRI MRRSGETGGG K
101: SSAAASKGQV AVGWPPLRTY RINSLVNQAK SVPTEDDIQK DTTTTTTKNS VVAAVKNDEV GFIKSPMLVK VTMDGVIIGR KIDLNALDSY EALAKTLEQM
201: FFHTPSSVTT TRCKETRGAS ELLDGSSEYI ITYQDKDGDW MLVGDVPWLM FLGCVKRLRI MRRSGETGGG K
001: MNGLQEVCSS SGSVMIGLPA EEDENAAHSS EDSSCPDESV SETELDLALG LSIGRRKVRS SLSSSSSSLT RESGTKRSAD SSPAAASNAT RQVAVGWPPL
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
Arabidopsis Description
IAA10Auxin-responsive protein IAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q38828]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.