Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021117.1-P | Field mustard | cytosol, nucleus, plastid | 97.97 | 97.97 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 97.97 | 97.97 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 90.86 | 92.27 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 90.86 | 92.27 |
| AT3G15540.1 | Thale cress | nucleus | 89.34 | 89.34 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 76.65 | 87.28 |
| KRH47514 | Soybean | nucleus | 57.87 | 60.96 |
| KRH09813 | Soybean | nucleus | 57.36 | 60.43 |
| CDY26042 | Canola | nucleus | 58.38 | 58.67 |
| KRH44390 | Soybean | nucleus | 57.87 | 58.46 |
| KRH23504 | Soybean | nucleus | 55.84 | 58.2 |
| CDY68807 | Canola | nucleus | 57.36 | 57.65 |
| CDY53305 | Canola | cytosol | 45.69 | 57.32 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 54.82 | 56.25 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 54.82 | 55.38 |
| Solyc03g120380.2.1 | Tomato | nucleus | 53.3 | 54.69 |
| PGSC0003DMT400042572 | Potato | nucleus | 28.43 | 51.85 |
| CDY53800 | Canola | nucleus | 48.22 | 50.53 |
| CDY40837 | Canola | nucleus | 42.13 | 48.54 |
| CDY35493 | Canola | nucleus | 42.13 | 48.54 |
| CDY10692 | Canola | nucleus | 42.13 | 48.26 |
| CDX94876 | Canola | nucleus | 41.62 | 47.95 |
| CDY10346 | Canola | nucleus | 41.62 | 47.67 |
| CDX92972 | Canola | nucleus | 41.12 | 47.37 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 42.13 | 46.11 |
| CDY53735 | Canola | nucleus | 40.1 | 45.93 |
| CDY10069 | Canola | nucleus | 42.64 | 45.65 |
| CDY36883 | Canola | nucleus | 39.59 | 45.35 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 42.64 | 45.16 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 43.65 | 45.03 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 43.15 | 44.5 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 41.62 | 44.09 |
| CDY10694 | Canola | mitochondrion | 37.06 | 41.95 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 46.7 | 39.83 |
| CDY18214 | Canola | nucleus | 44.67 | 39.29 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 46.7 | 38.98 |
| CDX89832 | Canola | nucleus | 44.16 | 38.84 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 44.67 | 37.77 |
| CDY32537 | Canola | nucleus | 43.65 | 37.72 |
| CDY40881 | Canola | cytosol | 35.03 | 37.7 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 45.18 | 37.55 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 43.15 | 37.28 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 44.67 | 37.13 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 43.15 | 37.12 |
| CDY47148 | Canola | nucleus | 43.65 | 36.91 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 43.65 | 35.83 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 43.65 | 35.83 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 44.16 | 35.37 |
| CDY06836 | Canola | nucleus | 42.64 | 33.33 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 30.46 | 33.15 |
| CDY50750 | Canola | nucleus, plastid | 47.21 | 31.96 |
| CDY25617 | Canola | nucleus | 42.64 | 31.58 |
| CDX89499 | Canola | nucleus | 42.64 | 31.0 |
| CDY37837 | Canola | mitochondrion | 43.15 | 28.72 |
| CDY68170 | Canola | nucleus, plastid | 44.67 | 28.3 |
| CDY18679 | Canola | plastid | 44.67 | 28.21 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 43.15 | 25.84 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 36.04 | 25.72 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 43.15 | 25.6 |
| CDY63072 | Canola | nucleus | 43.15 | 21.36 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078G5V8 | UniProt:A0A078G5V8 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY21845 | ProteinID:CDY21845 | ProteinID:CDY21845.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00018145001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF87 | SUPFAM:SSF54277 | UniParc:UPI0004EF135C |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g36030DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5V8]
Coordinates
chrLK032125:+:264975..266332
Molecular Weight (calculated)
21900.3 Da
IEP (calculated)
4.851
GRAVY (calculated)
-0.409
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDGLELEI TELRLGLPGR DVTEKMMKKR GFTEMIMTSS GSNSEQCESG VVSSGVDVEK VNETPAVKTQ VVGWPPVCSY RRKNSCKEVS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSNQGY DDLAFALDKL FGFHGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF IESCRRLRIM KRSEATGFGL QPREVNE
101: VSMDGVPYLR KMDLGSNQGY DDLAFALDKL FGFHGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF IESCRRLRIM KRSEATGFGL QPREVNE
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
Arabidopsis Description
IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.