CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68829
CDX72351
CDX75231
CDX75834
CDX80545
CDX82361
CDX82428
CDX83741
CDX87072
CDX88204
CDX89832
CDX92140
CDX92973
CDX95843
CDY01393
CDY10068
CDY10349
CDY10694
CDY13478
CDY15493
CDY18214
CDY19790
CDY20135
CDY21845
CDY26042
CDY27291
CDY29392
CDY30781
CDY32537
CDY33603
CDY36527
CDY36883
CDY39348
CDY39608
CDY46058
CDY46895
CDY53735
CDY53800
CDY61164
CDY62586
CDY63072
CDY63910
CDY65065
CDY68807
CDY71609
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	CDX89832	AT1G04250.1	21734647
AT1G19850.1	CDY10068	AT1G04250.1	21734647
AT1G19850.1	CDY15493	AT1G04250.1	21734647
AT1G19850.1	CDY18214	AT1G04250.1	21734647
AT1G19850.1	CDY32537	AT1G04250.1	21734647
AT1G19850.1	CDY63072	AT1G04250.1	21734647
AT1G19850.1	CDY36527	AT1G15050.1	21734647
AT1G19850.1	CDY39608	AT1G15050.1	21734647
AT1G19850.1	CDX83741	AT1G19850.1	14729917
AT1G19850.1	CDY01393	AT1G19850.1	14729917
AT1G19850.1	CDY29392	AT1G19850.1	14729917
AT1G19850.1	CDY39348	AT1G19850.1	14729917
AT1G19850.1	CDY61164	AT1G19850.1	14729917
AT1G19850.1	CDY62586	AT1G19850.1	14729917
AT1G19850.1	CDX83741	AT1G19850.1	21734647
AT1G19850.1	CDY01393	AT1G19850.1	21734647
AT1G19850.1	CDY29392	AT1G19850.1	21734647
AT1G19850.1	CDY39348	AT1G19850.1	21734647
AT1G19850.1	CDY61164	AT1G19850.1	21734647
AT1G19850.1	CDY62586	AT1G19850.1	21734647
AT1G19850.1	CDX83741	AT1G19850.1	22096563
AT1G19850.1	CDY01393	AT1G19850.1	22096563
AT1G19850.1	CDY29392	AT1G19850.1	22096563
AT1G19850.1	CDY39348	AT1G19850.1	22096563
AT1G19850.1	CDY61164	AT1G19850.1	22096563
AT1G19850.1	CDY62586	AT1G19850.1	22096563
AT1G19850.1	CDX83741	AT1G19850.1	24485461
AT1G19850.1	CDY01393	AT1G19850.1	24485461
AT1G19850.1	CDY29392	AT1G19850.1	24485461
AT1G19850.1	CDY39348	AT1G19850.1	24485461
AT1G19850.1	CDY61164	AT1G19850.1	24485461
AT1G19850.1	CDY62586	AT1G19850.1	24485461
AT1G19850.1	CDY26042	AT1G52830.1	14729917
AT1G19850.1	CDY53800	AT1G52830.1	14729917
AT1G19850.1	CDY68807	AT1G52830.1	14729917
AT1G19850.1	CDY27291	AT1G59750.1	22096563
AT1G19850.1	CDY33603	AT1G59750.1	22096563
AT1G19850.1	CDY65065	AT1G59750.1	22096563
AT1G19850.1	CDX75834	AT3G15540.1	14729917
AT1G19850.1	CDX82428	AT3G15540.1	14729917
AT1G19850.1	CDY20135	AT3G15540.1	14729917
AT1G19850.1	CDY21845	AT3G15540.1	14729917
AT1G19850.1	CDY71748	AT3G15540.1	14729917
AT1G19850.1	CDX75834	AT3G15540.1	22096563
AT1G19850.1	CDX82428	AT3G15540.1	22096563
AT1G19850.1	CDY20135	AT3G15540.1	22096563
AT1G19850.1	CDY21845	AT3G15540.1	22096563
AT1G19850.1	CDY71748	AT3G15540.1	22096563
AT1G19850.1	CDX82361	AT3G17600.1	21734647
AT1G19850.1	CDX92140	AT3G17600.1	21734647
AT1G19850.1	CDX95843	AT3G17600.1	21734647
AT1G19850.1	CDY46058	AT3G17600.1	21734647
AT1G19850.1	CDY46895	AT3G17600.1	21734647
AT1G19850.1	CDY71609	AT3G17600.1	21734647
AT1G19850.1	CDX92973	AT3G23050.1	21734647
AT1G19850.1	CDY10349	AT3G23050.1	21734647
AT1G19850.1	CDY10694	AT3G23050.1	21734647
AT1G19850.1	CDY30781	AT3G23050.1	21734647
AT1G19850.1	CDY63910	AT3G23050.1	21734647
AT1G19850.1	CDY36883	AT4G14560.1	14729917
AT1G19850.1	CDY53735	AT4G14560.1	14729917
AT1G19850.1	CDY36883	AT4G14560.1	22096563
AT1G19850.1	CDY53735	AT4G14560.1	22096563
AT1G19850.1	CDY36883	AT4G14560.1	9342315
AT1G19850.1	CDY53735	AT4G14560.1	9342315
AT1G19850.1	CDX68829	AT4G32280.1	21734647
AT1G19850.1	CDX72351	AT4G32280.1	21734647
AT1G19850.1	CDX75231	AT4G32280.1	21734647
AT1G19850.1	CDY13478	AT4G32280.1	21734647
AT1G19850.1	CDX80545	AT5G25890.1	21734647
AT1G19850.1	CDX87072	AT5G25890.1	21734647
AT1G19850.1	CDX88204	AT5G25890.1	21734647
AT1G19850.1	CDY19790	AT5G25890.1	21734647
AT1G19850.1	CDX80545	AT5G25890.1	22096563
AT1G19850.1	CDX87072	AT5G25890.1	22096563
AT1G19850.1	CDX88204	AT5G25890.1	22096563
AT1G19850.1	CDY19790	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025775.1-P	Field mustard	nucleus	53.2	99.15
CDY39348	Canola	nucleus	96.69	96.36
CDY61164	Canola	nucleus	88.01	89.55
CDY01393	Canola	nucleus	88.24	89.36
CDY62586	Canola	nucleus	85.27	88.3
CDX83741	Canola	nucleus	85.16	88.18
AT1G19850.1	Thale cress	nucleus	90.18	87.58
VIT_18s0001g13930.t01	Wine grape	nucleus	63.01	57.92
Solyc04g081240.2.1	Tomato	nucleus	61.42	57.85
PGSC0003DMT400009660	Potato	nucleus	61.19	57.7
KRH17404	Soybean	nucleus	60.96	57.42
KRH05923	Soybean	nucleus	61.07	57.34
GSMUA_Achr1P20040_001	Banana	nucleus	45.21	50.64
GSMUA_Achr6P36980_001	Banana	nucleus	45.21	46.15
EES13038	Sorghum	nucleus	46.46	43.02
Zm00001d001945_P002	Maize	nucleus	45.78	42.3
TraesCS2A01G491000.1	Wheat	nucleus	45.89	42.09
TraesCS2B01G519200.2	Wheat	nucleus	45.89	42.09
Os04t0664400-01	Rice	nucleus	44.18	42.07
TraesCS2D01G491200.2	Wheat	nucleus	45.78	41.99
HORVU2Hr1G109650.18	Barley	nucleus	45.43	41.59
Zm00001d026540_P002	Maize	nucleus	45.43	41.5
GSMUA_Achr1P20000_001	Banana	nucleus	44.75	40.37
CDY12048	Canola	nucleus	38.01	39.32
CDX90245	Canola	nucleus	38.01	39.08
CDY39274	Canola	nucleus	34.36	38.64
CDY02285	Canola	nucleus	38.47	38.6
CDY09598	Canola	nucleus	38.24	38.51
CDY07460	Canola	nucleus	34.25	38.41
CDX95705	Canola	nucleus	23.74	38.17
CDY53537	Canola	nucleus	35.39	38.08
CDX74594	Canola	nucleus	35.39	37.85
CDX80025	Canola	nucleus	25.23	37.84
CDY47607	Canola	nucleus	25.8	37.42
CDY27291	Canola	nucleus	25.8	36.51
CDY03502	Canola	nucleus	24.77	36.17
CDY10978	Canola	nucleus	25.46	35.68
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	42.69	35.62
CDY50434	Canola	nucleus	25.34	35.52
CDY69758	Canola	nucleus	16.21	34.13
CDY65065	Canola	nucleus	25.68	34.04
CDY67714	Canola	nucleus	20.55	33.9
CDY33603	Canola	nucleus	25.57	33.89
CDX96672	Canola	nucleus	39.38	33.82
CDX92437	Canola	nucleus	39.95	33.65
CDX83778	Canola	nucleus	39.16	33.63
CDY21993	Canola	nucleus	20.89	33.58
CDY26690	Canola	nucleus	39.61	33.08
CDY16560	Canola	nucleus	39.16	32.92
CDY41030	Canola	nucleus	39.61	32.8
CDY48583	Canola	nucleus	20.43	32.72
CDX94748	Canola	endoplasmic reticulum, vacuole	13.58	32.16
CDY45069	Canola	nucleus	40.53	31.9
CDY31545	Canola	nucleus	26.71	30.91
CDX80168	Canola	nucleus	26.6	30.7
CDY41720	Canola	nucleus	19.06	30.36
CDY53570	Canola	nucleus	17.35	30.34
CDY00245	Canola	nucleus	28.65	29.49
CDX86939	Canola	nucleus	28.54	29.41
CDX87230	Canola	nucleus	27.74	29.35
CDX94777	Canola	nucleus	18.61	29.26
CDY36940	Canola	nucleus	18.49	29.24
CDY49005	Canola	nucleus	18.38	28.9
CDY24168	Canola	nucleus	18.49	28.77
CDY67247	Canola	nucleus	27.74	28.55
CDY54111	Canola	nucleus	18.26	28.22
CDY16798	Canola	nucleus	27.97	27.94
CDY55738	Canola	nucleus	16.67	27.04
CDX94484	Canola	nucleus	16.1	22.52
CDX94528	Canola	nucleus	15.64	20.48
CDY24162	Canola	nucleus	13.36	18.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078GW89	UniProt:A0A078GW89
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY29392	ProteinID:CDY29392	ProteinID:CDY29392.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00042975001	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EEE4C5	SEG:seg	:	:	:

Description

BnaA06g14040DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078GW89]

Coordinates

chrLK032236:-:203565..207393

Molecular Weight (calculated)

96930.3 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.445

Length

876 amino acids

Sequence
(BLAST)

001: MMASVEEKMK TNGLVNGGTT TTSQSSLLEE MKLLKDQSGT RKPVINSELW HACAGPLVCL PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL
101: MCQVHNVTLH ADKDSDEIYA QMSLQPVHSE RDVFPAPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP LDYTAQPPTQ ELVVRDLHEN
201: TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR DEKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH ATANRTPFLI FYNPRACPAE
301: FVIPLAKYRK AICGSQLSVG MRFGMMFETE DSGKRRYMGT IVGISDMDPL RWSGSKWRNL QVEWDEPGCN DKPTRVSPWD IETPESLFIF PSLTSGLKRQ
401: LHPSYFAAGE TEWGSLIKRP LIRDSTNGIL PYASFPNMAS EQLMRMMMRP HNNNNNQNAS SFMSEMQQNL LRGHGGLLGD MNMQQQPMVS EMVQPESKLT
501: VNPSTSNTSG QEQNLFQSMS APPKPTLSGC SSGRVNHGNE QKSVEQASQV RTVAVCNESA LSPLQADPCP DTSQQIYPPQ SDPINGFSFL ETEELTSQVS
601: SFQSLAGSYK QPSLLTSQDS SAVVLPDSTN SPLFHDVWDN QLKFDQFSPL MQQDLYGCQD STTSNILDPP PLSNTVLDDF CAIKETDFQN HHPSDCLVGN
701: SNTSFAQDVS QITSASFADS KAISRQDNSG GTTGTSSSNV DFDDTSLLQQ NCKGSWQKLA ATPRVRTYTK VQKTGSVGRS IDVTSFRDYN ELKTAIECMF
801: GLEGLLTRPQ SSGWKLVYVD YESDVLLVGD DPWEEFVGCV RCIRILSPTE VEQMSEEGMK LLNSACINDL KSSVSK

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.