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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68829
CDX72351
CDX75231
CDX75834
CDX80545
CDX82361
CDX82428
CDX83741
CDX87072
CDX88204
CDX89832
CDX92140
CDX92973
CDX95843
CDY01393
CDY10068
CDY10349
CDY10694
CDY13478
CDY15493
CDY18214
CDY19790
CDY20135
CDY21845
CDY26042
CDY27291
CDY29392
CDY30781
CDY32537
CDY33603
CDY36527
CDY36883
CDY39348
CDY39608
CDY46058
CDY46895
CDY53735
CDY53800
CDY61164
CDY62586
CDY63072
CDY63910
CDY65065
CDY68807
CDY71609
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19850.1 CDX89832 AT1G04250.1 21734647
AT1G19850.1 CDY10068 AT1G04250.1 21734647
AT1G19850.1 CDY15493 AT1G04250.1 21734647
AT1G19850.1 CDY18214 AT1G04250.1 21734647
AT1G19850.1 CDY32537 AT1G04250.1 21734647
AT1G19850.1 CDY63072 AT1G04250.1 21734647
AT1G19850.1 CDY36527 AT1G15050.1 21734647
AT1G19850.1 CDY39608 AT1G15050.1 21734647
AT1G19850.1 CDX83741 AT1G19850.1 14729917
AT1G19850.1 CDY01393 AT1G19850.1 14729917
AT1G19850.1 CDY29392 AT1G19850.1 14729917
AT1G19850.1 CDY39348 AT1G19850.1 14729917
AT1G19850.1 CDY61164 AT1G19850.1 14729917
AT1G19850.1 CDY62586 AT1G19850.1 14729917
AT1G19850.1 CDX83741 AT1G19850.1 21734647
AT1G19850.1 CDY01393 AT1G19850.1 21734647
AT1G19850.1 CDY29392 AT1G19850.1 21734647
AT1G19850.1 CDY39348 AT1G19850.1 21734647
AT1G19850.1 CDY61164 AT1G19850.1 21734647
AT1G19850.1 CDY62586 AT1G19850.1 21734647
AT1G19850.1 CDX83741 AT1G19850.1 22096563
AT1G19850.1 CDY01393 AT1G19850.1 22096563
AT1G19850.1 CDY29392 AT1G19850.1 22096563
AT1G19850.1 CDY39348 AT1G19850.1 22096563
AT1G19850.1 CDY61164 AT1G19850.1 22096563
AT1G19850.1 CDY62586 AT1G19850.1 22096563
AT1G19850.1 CDX83741 AT1G19850.1 24485461
AT1G19850.1 CDY01393 AT1G19850.1 24485461
AT1G19850.1 CDY29392 AT1G19850.1 24485461
AT1G19850.1 CDY39348 AT1G19850.1 24485461
AT1G19850.1 CDY61164 AT1G19850.1 24485461
AT1G19850.1 CDY62586 AT1G19850.1 24485461
AT1G19850.1 CDY26042 AT1G52830.1 14729917
AT1G19850.1 CDY53800 AT1G52830.1 14729917
AT1G19850.1 CDY68807 AT1G52830.1 14729917
AT1G19850.1 CDY27291 AT1G59750.1 22096563
AT1G19850.1 CDY33603 AT1G59750.1 22096563
AT1G19850.1 CDY65065 AT1G59750.1 22096563
AT1G19850.1 CDX75834 AT3G15540.1 14729917
AT1G19850.1 CDX82428 AT3G15540.1 14729917
AT1G19850.1 CDY20135 AT3G15540.1 14729917
AT1G19850.1 CDY21845 AT3G15540.1 14729917
AT1G19850.1 CDY71748 AT3G15540.1 14729917
AT1G19850.1 CDX75834 AT3G15540.1 22096563
AT1G19850.1 CDX82428 AT3G15540.1 22096563
AT1G19850.1 CDY20135 AT3G15540.1 22096563
AT1G19850.1 CDY21845 AT3G15540.1 22096563
AT1G19850.1 CDY71748 AT3G15540.1 22096563
AT1G19850.1 CDX82361 AT3G17600.1 21734647
AT1G19850.1 CDX92140 AT3G17600.1 21734647
AT1G19850.1 CDX95843 AT3G17600.1 21734647
AT1G19850.1 CDY46058 AT3G17600.1 21734647
AT1G19850.1 CDY46895 AT3G17600.1 21734647
AT1G19850.1 CDY71609 AT3G17600.1 21734647
AT1G19850.1 CDX92973 AT3G23050.1 21734647
AT1G19850.1 CDY10349 AT3G23050.1 21734647
AT1G19850.1 CDY10694 AT3G23050.1 21734647
AT1G19850.1 CDY30781 AT3G23050.1 21734647
AT1G19850.1 CDY63910 AT3G23050.1 21734647
AT1G19850.1 CDY36883 AT4G14560.1 14729917
AT1G19850.1 CDY53735 AT4G14560.1 14729917
AT1G19850.1 CDY36883 AT4G14560.1 22096563
AT1G19850.1 CDY53735 AT4G14560.1 22096563
AT1G19850.1 CDY36883 AT4G14560.1 9342315
AT1G19850.1 CDY53735 AT4G14560.1 9342315
AT1G19850.1 CDX68829 AT4G32280.1 21734647
AT1G19850.1 CDX72351 AT4G32280.1 21734647
AT1G19850.1 CDX75231 AT4G32280.1 21734647
AT1G19850.1 CDY13478 AT4G32280.1 21734647
AT1G19850.1 CDX80545 AT5G25890.1 21734647
AT1G19850.1 CDX87072 AT5G25890.1 21734647
AT1G19850.1 CDX88204 AT5G25890.1 21734647
AT1G19850.1 CDY19790 AT5G25890.1 21734647
AT1G19850.1 CDX80545 AT5G25890.1 22096563
AT1G19850.1 CDX87072 AT5G25890.1 22096563
AT1G19850.1 CDX88204 AT5G25890.1 22096563
AT1G19850.1 CDY19790 AT5G25890.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01393 Canola nucleus 96.75 96.3
CDY29392 Canola nucleus 89.55 88.01
CDY39348 Canola nucleus 89.55 87.71
CDX83741 Canola nucleus 85.6 87.12
CDY62586 Canola nucleus 85.13 86.64
AT1G19850.1 Thale cress nucleus 89.9 85.81
VIT_18s0001g13930.t01 Wine grape nucleus 63.76 57.61
KRH17404 Soybean nucleus 61.79 57.2
Solyc04g081240.2.1 Tomato nucleus 61.67 57.1
PGSC0003DMT400009660 Potato nucleus 61.56 57.05
KRH05923 Soybean nucleus 61.79 57.02
GSMUA_Achr1P20040_001 Banana nucleus 46.34 51.02
GSMUA_Achr6P36980_001 Banana nucleus 45.76 45.92
EES13038 Sorghum nucleus 46.57 42.39
Os04t0664400-01 Rice nucleus 44.83 41.96
TraesCS2B01G519200.2 Wheat nucleus 46.34 41.78
TraesCS2D01G491200.2 Wheat nucleus 46.34 41.78
TraesCS2A01G491000.1 Wheat nucleus 46.23 41.68
HORVU2Hr1G109650.18 Barley nucleus 46.11 41.48
Zm00001d001945_P002 Maize nucleus 45.41 41.24
Zm00001d026540_P002 Maize nucleus 45.64 40.98
GSMUA_Achr1P20000_001 Banana nucleus 45.76 40.58
CDY12048 Canola nucleus 37.98 38.61
CDX95705 Canola nucleus 24.39 38.53
CDX90245 Canola nucleus 37.98 38.38
CDY02285 Canola nucleus 38.91 38.37
CDY09598 Canola nucleus 38.68 38.28
CDY39274 Canola nucleus 34.61 38.25
CDX80025 Canola nucleus 25.9 38.18
CDY07460 Canola nucleus 34.49 38.03
CDX74594 Canola nucleus 35.66 37.48
CDY53537 Canola nucleus 35.31 37.35
CDY47607 Canola nucleus 26.02 37.09
CDY27291 Canola nucleus 26.13 36.35
CDY03502 Canola nucleus 24.97 35.83
CDY10978 Canola nucleus 25.78 35.52
CDY50434 Canola nucleus 25.67 35.36
GSMUA_Achr1P20010_001 Banana plasma membrane, plastid 43.09 35.33
CDX96672 Canola nucleus 40.42 34.12
CDY65065 Canola nucleus 26.13 34.04
CDX83778 Canola nucleus 40.19 33.92
CDY33603 Canola nucleus 26.02 33.89
CDY21993 Canola nucleus 21.37 33.76
CDY67714 Canola nucleus 20.79 33.71
CDY69758 Canola nucleus 16.26 33.65
CDX92437 Canola nucleus 40.3 33.37
CDY26690 Canola nucleus 40.42 33.17
CDY48583 Canola nucleus 21.02 33.09
CDY41030 Canola nucleus 40.42 32.89
CDY16560 Canola nucleus 39.37 32.53
CDX94748 Canola endoplasmic reticulum, vacuole 13.82 32.16
CDY45069 Canola nucleus 40.53 31.36
CDY31545 Canola nucleus 26.71 30.38
CDY41720 Canola nucleus 19.4 30.36
CDY53570 Canola nucleus 17.65 30.34
CDX80168 Canola nucleus 26.71 30.3
CDY36940 Canola nucleus 18.93 29.42
CDX94777 Canola nucleus 18.93 29.26
CDY00245 Canola nucleus 28.92 29.26
CDX86939 Canola nucleus 28.69 29.06
CDX87230 Canola nucleus 27.87 28.99
CDY24168 Canola nucleus 18.93 28.95
CDY49005 Canola nucleus 18.7 28.9
CDY67247 Canola nucleus 27.99 28.32
CDY54111 Canola nucleus 18.35 27.87
CDY16798 Canola nucleus 28.11 27.59
CDY55738 Canola nucleus 16.96 27.04
CDX94484 Canola nucleus 16.38 22.52
CDX94528 Canola nucleus 15.8 20.33
CDY24162 Canola nucleus 13.82 18.31
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078JAY4UniProt:A0A078JAY4
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDY61164ProteinID:CDY61164ProteinID:CDY61164.1
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00030648001InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507
PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF10SMART:SM01019SUPFAM:SSF101936
SUPFAM:SSF54277UniParc:UPI0004EEF819SEG:seg:::
Description
BnaC07g48490DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078JAY4]
Coordinates
chrLK033962:+:30973..35235
Molecular Weight (calculated)
95412.9 Da
IEP (calculated)
6.151
GRAVY (calculated)
-0.435
Length
861 amino acids
Sequence
(BLAST)
001: MMASLACVED KMKTNGLVNG GTTPATSQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVSLPQVGSL VYYFPQGHSE QVAVSTRRSA TSQVPNYPNL
101: PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD
201: LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA
301: CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG
401: LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNSNN QNATTSFMSE MQQQNVLMGQ GGLLGDMKMQ QQPMVMNPES
501: KLTVNPSASN TSGQEQNLPT QSMHAHSISE KPTLSGCSSG RASHGNEQQS MEQANQVCNE EKVNELMQKP VALSPCPDIS QQIYPPTNGF SFLETEELTS
601: QVSSFQSLAG SYKQPLMDSS AVALPDTTNS SLFHDVWDNQ LNGLKFDQFS PLMQQDLYGN NSTNSNILDP PPPLSNTVLD DFCAIKETDF QMIGNNNTSF
701: TQDVQSQITS ASFADNSGGT GTSSSNVDFD DSSLLQNSKG SWQKKLATPR VRTYTKVQKT GSVGRSIDVT SFRDYQELKS AIECMFGLEG LLTRPQSSGW
801: KLVYVDYESD VLLVGDDPWE EFVGCVKCIR ILSPTEVQQM SEEGMKLLNS ACINDLKTSV P
Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.