Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41720 | Canola | nucleus | 96.81 | 88.18 |
| CDY55738 | Canola | nucleus | 82.04 | 76.11 |
| CDY49005 | Canola | nucleus | 77.64 | 69.84 |
| CDY36940 | Canola | nucleus | 77.05 | 69.68 |
| CDX94777 | Canola | nucleus | 77.45 | 69.66 |
| CDY54111 | Canola | nucleus | 77.25 | 68.25 |
| CDY24168 | Canola | nucleus | 75.05 | 66.79 |
| CDX94484 | Canola | nucleus | 81.24 | 65.02 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 44.51 | 60.27 |
| CDY69758 | Canola | nucleus | 47.9 | 57.69 |
| CDX94528 | Canola | nucleus | 76.25 | 57.1 |
| CDY21993 | Canola | nucleus | 61.48 | 56.51 |
| CDY67714 | Canola | nucleus | 59.48 | 56.12 |
| CDY48583 | Canola | nucleus | 61.08 | 55.94 |
| AT1G35240.1 | Thale cress | nucleus | 52.69 | 44.59 |
| AT1G34410.1 | Thale cress | nucleus | 53.69 | 44.39 |
| AT1G35520.1 | Thale cress | nucleus | 52.49 | 44.35 |
| AT1G34390.1 | Thale cress | nucleus | 52.89 | 44.31 |
| CDY24162 | Canola | nucleus | 57.29 | 44.15 |
| AT1G34310.1 | Thale cress | nucleus | 52.1 | 44.01 |
| AT1G35540.1 | Thale cress | nucleus | 52.89 | 43.8 |
| AT1G34170.3 | Thale cress | nucleus | 47.7 | 43.77 |
| CDY47607 | Canola | nucleus | 44.91 | 37.25 |
| CDY03502 | Canola | nucleus | 43.11 | 36.0 |
| CDY10978 | Canola | nucleus | 44.71 | 35.84 |
| CDY50434 | Canola | nucleus | 44.51 | 35.68 |
| CDX80025 | Canola | nucleus | 40.72 | 34.93 |
| CDX95705 | Canola | nucleus | 36.93 | 33.95 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 45.71 | 33.58 |
| KRH49135 | Soybean | nucleus | 43.31 | 32.68 |
| KRH00001 | Soybean | nucleus | 42.71 | 32.23 |
| KRH65922 | Soybean | nucleus | 43.51 | 31.55 |
| KRH75716 | Soybean | nucleus | 43.51 | 31.5 |
| CDY27291 | Canola | nucleus | 38.92 | 31.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.52 | 31.18 |
| PGSC0003DMT400031965 | Potato | nucleus | 40.52 | 30.99 |
| Solyc08g008380.2.1 | Tomato | nucleus | 41.92 | 30.75 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 40.92 | 30.69 |
| GSMUA_Achr10P... | Banana | nucleus | 40.12 | 30.13 |
| Solyc08g082630.2.1 | Tomato | nucleus | 38.72 | 30.12 |
| CDY33603 | Canola | nucleus | 39.72 | 30.11 |
| CDY65065 | Canola | nucleus | 39.52 | 29.95 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 39.72 | 29.88 |
| Os01t0236300-01 | Rice | nucleus | 37.92 | 27.18 |
| EES02172 | Sorghum | nucleus | 36.53 | 26.6 |
| Zm00001d039267_P005 | Maize | nucleus | 35.73 | 25.87 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 37.52 | 24.8 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 37.52 | 24.8 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 37.52 | 24.77 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 38.12 | 23.88 |
| CDX87230 | Canola | nucleus | 39.32 | 23.79 |
| CDX86939 | Canola | nucleus | 39.92 | 23.53 |
| CDY00245 | Canola | nucleus | 39.92 | 23.5 |
| CDY67247 | Canola | nucleus | 39.32 | 23.15 |
| CDY16798 | Canola | nucleus | 39.12 | 22.35 |
| CDY31545 | Canola | nucleus | 32.53 | 21.53 |
| CDX80168 | Canola | nucleus | 32.53 | 21.48 |
| CDY07460 | Canola | nucleus | 32.34 | 20.74 |
| CDY39274 | Canola | nucleus | 32.14 | 20.67 |
| CDY53537 | Canola | nucleus | 31.54 | 19.41 |
| CDX74594 | Canola | nucleus | 31.54 | 19.29 |
| CDY12048 | Canola | nucleus | 32.34 | 19.13 |
| CDX90245 | Canola | nucleus | 32.14 | 18.9 |
| CDY09598 | Canola | nucleus | 32.53 | 18.74 |
| CDY02285 | Canola | nucleus | 32.53 | 18.67 |
| CDY62586 | Canola | nucleus | 30.54 | 18.09 |
| CDX83741 | Canola | nucleus | 30.54 | 18.09 |
| CDY61164 | Canola | nucleus | 30.34 | 17.65 |
| CDY01393 | Canola | nucleus | 30.34 | 17.57 |
| CDY29392 | Canola | nucleus | 30.34 | 17.35 |
| CDY39348 | Canola | nucleus | 29.94 | 17.06 |
| CDX83778 | Canola | nucleus | 31.94 | 15.69 |
| CDX96672 | Canola | nucleus | 31.94 | 15.69 |
| CDY26690 | Canola | nucleus | 32.14 | 15.35 |
| CDY41030 | Canola | nucleus | 31.94 | 15.12 |
| CDX92437 | Canola | nucleus | 30.74 | 14.81 |
| CDY16560 | Canola | nucleus | 30.74 | 14.78 |
| CDY45069 | Canola | nucleus | 30.94 | 13.93 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078IRA2 | UniProt:A0A078IRA2 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY53570 | ProteinID:CDY53570 | ProteinID:CDY53570.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00011003001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EE5AB2 |
Description
BnaC09g51490DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IRA2]
Coordinates
chrLK033216:-:5551..8177
Molecular Weight (calculated)
57252.5 Da
IEP (calculated)
6.829
GRAVY (calculated)
-0.376
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDELCQLKP IFDIPSKICC NVFSIKLKVE TNTNEIYAEV SLLPDTSDVE IPIPKTENNI QNINYFTKVL SASDTSTNGG FVLYKRHAIE CLPLLDVSQL
101: TPSQEIIAKD IHGHEWSFKH TLRGTPKRHL FTSGWNEFAK GKKLVAGDSF VFLRGENGES RVGISKAAHQ QRNIPTSLIS KQSMHHSVVA TALNAIENKC
201: MFVVFYKPRS SQFIVNFDKF VDRVNNKFNI GSKFSMKFEG KDLNEIRYNG TIVGVRDFSA HWKDSEWRSL EVQWDEAATI PRPDKVSPWE IELLTHSSNI
301: FKSDTLKHKR QLEVHEFGSK MWVPTIYNER MVQAMKEPST TTATTSCRLF GVDLMVPAIT KDPVEPIVSN KKCKISKIFE DEKVDHVQAK SRTKVHMEGV
401: IERTVDLTIF DGYNQLIDEL ERLFDIKGEL HMHNQWKMFF IYNDGDMMIL GDDPWPKFCN MAKEIFICSK EDVKIGIANN RFSEGDPALT TTILPPDVNN
501: T
101: TPSQEIIAKD IHGHEWSFKH TLRGTPKRHL FTSGWNEFAK GKKLVAGDSF VFLRGENGES RVGISKAAHQ QRNIPTSLIS KQSMHHSVVA TALNAIENKC
201: MFVVFYKPRS SQFIVNFDKF VDRVNNKFNI GSKFSMKFEG KDLNEIRYNG TIVGVRDFSA HWKDSEWRSL EVQWDEAATI PRPDKVSPWE IELLTHSSNI
301: FKSDTLKHKR QLEVHEFGSK MWVPTIYNER MVQAMKEPST TTATTSCRLF GVDLMVPAIT KDPVEPIVSN KKCKISKIFE DEKVDHVQAK SRTKVHMEGV
401: IERTVDLTIF DGYNQLIDEL ERLFDIKGEL HMHNQWKMFF IYNDGDMMIL GDDPWPKFCN MAKEIFICSK EDVKIGIANN RFSEGDPALT TTILPPDVNN
501: T
001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
Arabidopsis Description
ARF12Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.